YRC Public Data Repository - Protein Structure Prediction

Protein:	gi\|12839713, gi\|...
Organism:	Mus musculus
Length:	192 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|12839713, gi|....

Description	E-value	Query Range	Subject Range
gi\|89337266, gi\|... - gi\|89337266\|ref\|NP_080700.3\| coenzyme Q10 homolog B isoform 2 [Mus musculus], gi\|148667599\|gb\|EDL000...	224.0	[0..1]	[192..1]
gi\|34875875, gi\|... - gi\|57528275\|ref\|NP_001009671.1\| coenzyme Q10 homolog B [Rattus norvegicus], gi\|56972093\|gb\|AAH88273....	204.0	[0..1]	[192..1]
gi\|114582370 - gi\|114582370\|ref\|XP_001168795.1\| PREDICTED: hypothetical protein isoform 1 [Pan troglodytes]	196.0	[0..3]	[192..1]
COQ10B - coenzyme Q10 homolog B (S. cerevisiae)	196.0	[0..3]	[192..1]
gi\|94574086, gi\|... - gi\|94574086\|gb\|AAI16073.1\| Coenzyme Q10 homolog B (S. cerevisiae) [Bos taurus], gi\|115497098\|ref\|NP_...	195.0	[0..22]	[192..74]
CQ10B_PONPY - Protein COQ10 B, mitochondrial precursor - Pongo pygmaeus (Orangutan) CQ10B_PONAB - Coenzyme Q-binding protein COQ10 homolog B, mitochondrial OS=Pongo abelii GN=COQ10B PE=2 SV=1	194.0	[0..3]	[192..1]

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Predicted Domain #1

Region A:
Residues: [1-192]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MIKAARTSQR ALARVASGCH PKSTTVTEAP ARGSARDVRY SMQEMYDVVS GMEDYQHFVP  60
   61 WCKKSDIISR RSGYCKTRLE VGFPPVLERY TSIVTLVKPH LVKASCTDGK LFNHLETIWR 120
  121 FSPGLPGYPR TCTLDFSISF EFRSLLHSQL ATLFFDEVVK QMVAAFERRA CKLYGPETNI 180
  181 PRELMLHEIH HT

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	28.69897
Match:	1t17A
Description:	Solution Structure of the 18 kDa Protein CC1736 from Caulobacter crescentus: The Northeast Structural Genomics Consortium Target CcR19
Matching Structure (courtesy of the PDB):

Predicted functions:

Term	Confidence	Notes
binding	0.453951550198712	bayes_pls_golite062009
catalytic activity	0.0116392906163881	bayes_pls_golite062009

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits

Predicted functions: