YRC Public Data Repository - Protein Structure Prediction

Protein:	AHSP_MOUSE
Organism:	Mus musculus
Length:	102 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for AHSP_MOUSE.

Description	E-value	Query Range	Subject Range
gi\|114662194, gi... - gi\|55643783\|ref\|XP_510954.1\| PREDICTED: similar to Chain A, Solution Structure Of The P30-Trans Form... gi\|123994801, gi... - gi\|123994801\|gb\|ABM85002.1\| erythroid associated factor [synthetic construct], gi\|123980044\|gb\|ABM81... AHSP - alpha hemoglobin stabilizing protein	199.0	[0..1]	[102..1]
gi\|109128359 - gi\|109128359\|ref\|XP_001113388.1\| PREDICTED: erythroid associated factor [Macaca mulatta]	193.0	[0..1]	[102..1]
gi\|163916628, gi... - gi\|27680026\|ref\|XP_215059.1\| PREDICTED: similar to erythroid associated factor [Rattus norvegicus], ...	186.0	[0..1]	[102..1]
AHSP_BOVIN - Alpha-hemoglobin-stabilizing protein OS=Bos taurus GN=AHSP PE=3 SV=1	168.0	[0..1]	[91..1]

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Predicted Domain #1

Region A:
Residues: [1-102]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MAPFQSNKDL ISTGIKEFNV LLDQQVFDDP LISEEDMVIV VHDWVNLYTN YYKKLVHGEQ  60
   61 EEQDRAMTEF QQELSTLGSQ FLAKYRTFLK SKEPPSNTLP SS

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	51.221849
Match:	1y01A
Description:	Crystal structure of AHSP bound to Fe(II) alpha-hemoglobin
Matching Structure (courtesy of the PDB):

Predicted functions:

Term	Confidence	Notes
hemoglobin binding	6.33731403252919	bayes_pls_golite062009
unfolded protein binding	4.17510328535304	bayes_pls_golite062009
binding	1.93645291666706	bayes_pls_golite062009
protein binding	0.449118977352733	bayes_pls_golite062009

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits

Predicted functions: