YRC Public Data Repository - Protein Structure Prediction

Protein:	OOEP_MOUSE
Organism:	Mus musculus
Length:	164 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for OOEP_MOUSE.

Description	E-value	Query Range	Subject Range
gi\|94408060 - gi\|94408060\|ref\|XP_996242.1\| PREDICTED: similar to developmental pluripotency associated 5 [Mus musc...	179.0	[0..29]	[133..486]
gi\|34854832, gi\|... - gi\|34854832\|ref\|XP_229957.2\| PREDICTED: similar to developmental pluripotency associated 5 [Rattus n...	167.0	[0..28]	[133..7]
DPPA5 - developmental pluripotency associated 5	165.0	[0..28]	[134..7]
gi\|109071700 - gi\|109071700\|ref\|XP_001112340.1\| PREDICTED: similar to developmental pluripotency associated 5 [Maca...	162.0	[0..28]	[134..7]
gi\|73973739 - gi\|73973739\|ref\|XP_538999.2\| PREDICTED: hypothetical protein XP_538999 [Canis familiaris]	161.0	[0..28]	[134..207]
gi\|114608124 - gi\|114608124\|ref\|XP_518581.2\| PREDICTED: similar to chromosome 6 open reading frame 148 [Pan troglod...	160.0	[0..29]	[128..156]

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Predicted Domain #1

Region A:
Residues: [1-164]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MASHTADADA KPDSDSQKLL NVLPVSLRLR TRPWWFPIQE VSNPLVLYME AWVAERVIGT  60
   61 DQAEISEIEW MCQALLTVDS VNSGNLAEIT IFGQPSAQTR MKNILLNMAA WHKENELQRA 120
  121 VKVKEVEEFL KIRASSILSK LSKKGLKLAG FPLPLEGRET QMES

[Run NCBI BLAST on this sequence.]

Detection Method:	FFAS03
Confidence:	1.03
Match:	2bl5A
Description:	Solution structure of the KH-QUA2 region of the Xenopus STAR-GSG Quaking protein.
Matching Structure (courtesy of the PDB):

Predicted functions:

Term	Confidence	Notes
binding	2.52662722505629	bayes_pls_golite062009
RNA binding	2.08708091793795	bayes_pls_golite062009
nucleic acid binding	2.0452205421051	bayes_pls_golite062009
protein binding	1.11991743432155	bayes_pls_golite062009
mRNA binding	0.171905257526637	bayes_pls_golite062009
catalytic activity	0.1435046019283	bayes_pls_golite062009

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits

Predicted functions: