| Protein: | XPA_MOUSE |
| Organism: | Mus musculus |
| Length: | 272 amino acids |
| Reference: | Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16 |
Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for XPA_MOUSE.
| Description | E-value | Query Range |
Subject Range |
|
|
332.0 | [0..4] | [272..2] |
|
|
332.0 | [0..1] | [272..1] |
|
|
330.0 | [0..11] | [272..9] |
|
|
330.0 | [0..11] | [272..9] |
|
|
324.0 | [0..4] | [272..2] |
|
Region A: Residues: [1-62] |
1 11 21 31 41 51
| | | | | |
1 MATAEEKQTS PEPVAADEPA QLPAAVRASV ERKRQRALML RQARLAARPY PAAAATGGVA 60
61 SV
|
| Detection Method: |  |
Shown below is our most confident prediction for this domain.
Click here to view all matches.
Found no confident structure predictions for this domain.
|
Region A: Residues: [63-272] |
1 11 21 31 41 51
| | | | | |
1 KAAPKMIDTK GGFILEEEEE KHEIGNIVHE PGPVMEFDYT ICEECGKEFM DSYLMNHFDL 60
61 PTCDSCRDAD DKHKLITKTE AKQEYLLKDC DLEKREPALR FLVKKNPRHS QWGDMKLYLK 120
121 LQVVKRALEV WGSQEALEDA KEVRQENREK MKQKKFDKKV KELRRAIRSS VWKRETTTHQ 180
181 HEYGPEENLE DDMYRKTCTL CGHELTYEKM
|
| Detection Method: | |
| Confidence: | 45.69897 |
| Match: | 1xpaA |
| Description: | SOLUTION STRUCTURE OF THE DNA-AND RPA-BINDING DOMAIN OF THE HUMAN REPAIR FACTOR XPA, NMR, 1 STRUCTURE |
Matching Structure (courtesy of the PDB): |
|
| Term | Confidence | Notes |
| binding | 2.96409924710655 | bayes_pls_golite062009 |
| protein binding | 2.44501340584871 | bayes_pls_golite062009 |
| transcription regulator activity | 2.22839475692516 | bayes_pls_golite062009 |
| DNA binding | 2.18702281581791 | bayes_pls_golite062009 |
| nucleic acid binding | 2.04270847321412 | bayes_pls_golite062009 |
| transcription activator activity | 1.60639114794515 | bayes_pls_golite062009 |
| sequence-specific DNA binding | 1.59705128803795 | bayes_pls_golite062009 |
| transcription factor activity | 1.44182975349714 | bayes_pls_golite062009 |
| structure-specific DNA binding | 0.610805977602876 | bayes_pls_golite062009 |
| ligand-dependent nuclear receptor activity | 0.55799224325565 | bayes_pls_golite062009 |
| RNA polymerase II transcription factor activity | 0.51536225088963 | bayes_pls_golite062009 |
| transcription factor binding | 0.43597775400036 | bayes_pls_golite062009 |
| transcription coactivator activity | 0.42962641193703 | bayes_pls_golite062009 |
| general RNA polymerase II transcription factor activity | 0.37925266318051 | bayes_pls_golite062009 |
| double-stranded DNA binding | 0.280685154942276 | bayes_pls_golite062009 |
| receptor activity | 0.230063209127305 | bayes_pls_golite062009 |
| catalytic activity | 0.101795606736461 | bayes_pls_golite062009 |
