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View Structure Prediction Details

Protein: DPOE4_MOUSE
Organism: Mus musculus
Length: 118 amino acids
Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16



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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for DPOE4_MOUSE.

Description E-value Query
Range		 Subject
Range
gi|74004226 - gi|74004226|ref|XP_854088.1| PREDICTED: similar to histone 1, H2ai (predicted) [Canis familiaris]
 124.0 [0..3] [110..53]
gi|50728592 - gi|50728592|ref|XP_416193.1| PREDICTED: similar to histone protein Hist2h3c1 [Gallus gallus]
 121.0 [0..3] [109..649]
gi|116057937 - gi|116057937|emb|CAL54140.1| Histones H3 and H4 (ISS) [Ostreococcus tauri]
 120.0 [0..3] [109..59]
gi|88943485 - gi|88943485|ref|XP_497711.2| PREDICTED: similar to H3 histone, family 2 isoform 2 [Homo sapiens]
 119.0 [0..3] [109..73]
gi|76612880 - gi|76612880|ref|XP_871849.1| PREDICTED: similar to H3 histone, family 2 isoform 2 [Bos taurus]
 116.0 [0..3] [109..235]
gi|7329709 - gi|7329709|emb|CAB82768.1| histone H3 [Fucus serratus]
 114.0 [0..3] [109..1]

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Predicted Domain #1
Region A:
Residues: [1-118] 
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MAAAAAAGSG TPREEEAPGG EAAASQAQAP TSAPGGVRLS RLPLARVKAL VKADPDVTLA  60
   61 GQEAIFILAR AAELFVETIA KDAYCCAQQG KRKTLQRRDL DNAIEAVDEF AFLEGTLD

[Run NCBI BLAST on this sequence.]

Detection Method: PSI-BLAST
Confidence: 25.154902
Match: 1u35A
Description: Crystal structure of the nucleosome core particle containing the histone domain of macroH2A
Matching Structure (courtesy of the PDB):

Predicted functions:

Term Confidence Notes
binding 0.581886805340955 bayes_pls_golite062009
YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle