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View Structure Prediction Details

Protein: PNO1_MOUSE
Organism: Mus musculus
Length: 248 amino acids
Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16



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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for PNO1_MOUSE.

Description E-value Query
Range		 Subject
Range
PNO1_RAT - RNA-binding protein PNO1 OS=Rattus norvegicus GN=Pno1 PE=2 SV=1
 213.0 [0..1] [248..1]
gi|62897797 - gi|62897797|dbj|BAD96838.1| putatative 28 kDa protein variant [Homo sapiens]
 209.0 [0..1] [248..1]
gi|109074076 - gi|109074076|ref|XP_001095777.1| PREDICTED: similar to putatative 28 kDa protein [Macaca mulatta]
 201.0 [0..1] [248..5]
PNO1_BOVIN - RNA-binding protein PNO1 OS=Bos taurus GN=PNO1 PE=2 SV=1
 196.0 [0..1] [248..5]
gi|73969846 - gi|73969846|ref|XP_531853.2| PREDICTED: similar to putatative 28 kDa protein isoform 1 [Canis famili...
 195.0 [0..1] [248..7]
gi|197100798 - gi|197100798|ref|NP_001125677.1| partner of NOB1 homolog [Pongo abelii]
gi|55728843 - gi|55728843|emb|CAH91160.1| hypothetical protein [Pongo abelii]
 181.0 [0..43] [248..1]
PNO1_XENTR - RNA-binding protein PNO1 OS=Xenopus tropicalis GN=pno1 PE=2 SV=1
 178.0 [0..1] [248..1]
gi|41351456 - gi|41351456|gb|AAH65596.1| Partner of NOB1 homolog (S. cerevisiae) [Danio rerio]
 177.0 [0..1] [248..1]

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Predicted Domain #1
Region A:
Residues: [1-68] 
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 METQSTGTED GFTPVTHRGG RRAKKRQAEQ SSAAGQDGEA GRMDTEEARP AKRPVFPPLS  60
   61 GDQLLTGK

[Run NCBI BLAST on this sequence.]

Detection Method: PSI-BLAST
Confidence: 6.522879
Match: 1ztgA
Description: No description for 1ztgA was found.

Predicted Domain #2
Region A:
Residues: [69-248] 
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 EETRKIPVPG NRYTPLKENW MKIFTPIVEH LGLQIRFNLK SRNVEIRTCK DTKDVSALTK  60
   61 AADFVKAFVL GFQVEDALAL IRLDDLFLES FEITDVKPLK GDHLSRAIGR IAGKGGKTKF 120
  121 TIENVTRTRI VLADVHVHIL GSFQNIKMAR TAICNLILGN PPSKVYGNIR AVASRSADRF 180
  181

[Run NCBI BLAST on this sequence.]

Detection Method: PSI-BLAST
Confidence: 22.0
Match: 1tuaA
Description: Structural genomics, 1.5A crystal structure of a hypothetical protein APE0754 from Aeropyrum pernix
Matching Structure (courtesy of the PDB):

Predicted functions:

Term Confidence Notes
binding 2.08112579633678 bayes_pls_golite062009
nucleic acid binding 1.89421940623565 bayes_pls_golite062009
RNA binding 1.48894932873199 bayes_pls_golite062009
mRNA binding 0.0519339703868569 bayes_pls_golite062009
YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle