YRC Public Data Repository - Protein Structure Prediction

Protein:	ATPF2_MOUSE
Organism:	Mus musculus
Length:	289 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for ATPF2_MOUSE.

Description	E-value	Query Range	Subject Range
gi\|62656170, gi\|... - gi\|62656170\|ref\|XP_220522.3\| PREDICTED: similar to ATP synthase mitochondrial F1 complex assembly fa...	443.0	[0..1]	[289..10]
gi\|149262138, gi... - gi\|56205548\|emb\|CAI24077.1\| ATP synthase mitochondrial F1 complex assembly factor 2 [Mus musculus], ...	441.0	[0..1]	[289..10]
HGNC:18802\|MIM:6... - synthase mitochondrial F1 complex assembly factor 2 gi\|117645306 - gi\|117645306\|emb\|CAL38119.1\| hypothetical protein [synthetic construct] ATPAF2 - ATP synthase mitochondrial F1 complex assembly factor 2	429.0	[0..1]	[289..1]
gi\|114668878, gi... - gi\|114668880\|ref\|XP_001159122.1\| PREDICTED: ATP synthase mitochondrial F1 complex assembly factor 2 ...	429.0	[0..1]	[289..1]
gi\|109113499 - gi\|109113499\|ref\|XP_001092786.1\| PREDICTED: similar to ATP synthase mitochondrial F1 complex assembl...	428.0	[0..1]	[289..1]
ATPF2_BOVIN - ATP synthase mitochondrial F1 complex assembly factor 2 OS=Bos taurus GN=ATPAF2 PE=2 SV=1	397.0	[0..1]	[288..1]
gi\|57086735 - gi\|57086735\|ref\|XP_546658.1\| PREDICTED: similar to ATP synthase mitochondrial F1 complex assembly fa...	364.0	[0..43]	[289..1]
gi\|38174102, gi\|... - gi\|45360725\|ref\|NP_989036.1\| hypothetical protein LOC394633 [Xenopus (Silurana) tropicalis], gi\|3817...	362.0	[0..30]	[289..17]
gi\|148223427, gi... - gi\|66910879\|gb\|AAH97914.1\| MGC115713 protein [Xenopus laevis], gi\|148223427\|ref\|NP_001090060.1\| hypo...	357.0	[0..13]	[289..11]

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Predicted Domain #1

Region A:
Residues: [1-289]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MWRIYPRLRD RWRGLLDRRL SDPTVSVWPG PAPQPPARAY VPPTERKRFY QNVSISQGEG  60
   61 GFEINLDHRK LKTPQAKLFT VPSEALAIAV ATEWDSQQDT IKFYTMHLTT LCNTSLDNPT 120
  121 QRSKDQLIRA AVKFLDTDTI CYRVEEPETL VELQKNEWDP VIEWAEKRYG MEIGSSTSIM 180
  181 GPSIPTQTRE VLTSHLSSYN MWALQGIEFV VAQLKSMLLT LGLIDLRLTV EQAVLLSRLE 240
  241 EEYQIQKWGN IEWAHDYELQ ELRARTAAGT LFVHLCSESS TVKHKLLQE

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	80.522879
Match:	2r6iA
Description:	No description for 2r6iA was found.

Predicted functions:

Term	Confidence	Notes
binding	2.14957672468792	bayes_pls_golite062009
protein binding	1.2388395457113	bayes_pls_golite062009

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits

Predicted functions: