YRC Public Data Repository - Protein Structure Prediction

Protein:	MSS4_MOUSE
Organism:	Mus musculus
Length:	123 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for MSS4_MOUSE.

Description	E-value	Query Range	Subject Range
gi\|61369643, gi\|... - gi\|61369656\|gb\|AAX43367.1\| RAB interacting factor [synthetic construct], gi\|61369649\|gb\|AAX43366.1\| ...	220.0	[0..1]	[123..1]
MSS4_RAT - Guanine nucleotide exchange factor MSS4 OS=Rattus norvegicus GN=Rabif PE=1 SV=1	220.0	[0..1]	[123..1]
gi\|61359547, gi\|... - gi\|61359564\|gb\|AAX41736.1\| RAB interacting factor [synthetic construct], gi\|61359557\|gb\|AAX41735.1\| ... RABIF - RAB interacting factor	220.0	[0..1]	[123..1]
gi\|114571866 - gi\|114571866\|ref\|XP_514105.2\| PREDICTED: RAB-interacting factor [Pan troglodytes] gi\|109018839 - gi\|109018839\|ref\|XP_001106028.1\| PREDICTED: similar to RAB-interacting factor [Macaca mulatta]	219.0	[0..1]	[123..1]
gi\|73960247 - gi\|73960247\|ref\|XP_537120.2\| PREDICTED: similar to RAB-interacting factor [Canis familiaris]	215.0	[0..1]	[123..1]

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Predicted Domain #1

Region A:
Residues: [1-123]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MEPCELQNEL VSAEGRNRKA VLCQRCGSRV LQPGTALFSR RQLFLPSMRK KPDLADGSNP  60
   61 DGDLLQEHWL VNDMFTFENV GFTKDVGNIK FLVCADCEIG PIGWHCLDDK NSFYVALERV 120
  121 SHE

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	57.045757
Match:	1fwqA
Description:	RabGEF Mss4
Matching Structure (courtesy of the PDB):

Predicted functions:

Term	Confidence	Notes
binding	1.21650180950788	bayes_pls_golite062009
protein binding	0.279759457393021	bayes_pls_golite062009
catalytic activity	0.024187041159957	bayes_pls_golite062009

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits

Predicted functions: