| Protein: | PUF6_SCHPO |
| Organism: | Schizosaccharomyces pombe 972h- |
| Length: | 642 amino acids |
| Reference: | Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16 |
Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for PUF6_SCHPO.
| Description | E-value | Query Range |
Subject Range |
|
|
398.0 | [0..20] | [489..583] |
|
|
397.0 | [0..20] | [489..595] |
|
|
397.0 | [0..20] | [489..597] |
|
|
397.0 | [0..20] | [489..596] |
|
|
396.0 | [0..20] | [489..597] |
|
|
396.0 | [0..20] | [489..593] |
|
Region A: Residues: [1-111] |
1 11 21 31 41 51
| | | | | |
1 MAIGKRKEST EVKKKDGSMN KRVKVAKLPK KVDSFSPKKK KNTTSSGSSE SDSMSQNDKK 60
61 KDSSLNESED EDFAGFGESA SENDELESAE SEAENDEESS SQKSNSKESH A
|
| Detection Method: |  |
Shown below is our most confident prediction for this domain.
Click here to view all matches.
Found no confident structure predictions for this domain.
|
Region A: Residues: [112-486] |
1 11 21 31 41 51
| | | | | |
1 QRKKLQKERK AMKPFADTSL KAKSLWDKLR QKTSIKAEER KTIIAELFDL IRTNVKQLVF 60
61 KHDMSRVVQT CVKFGSKQQR ETICAELAGS YVDLCKSPYG KYLAIKIFKY GTPKMKEVIL 120
121 GEMYGNVVKM IRHREAAYVV EDAFREFTNL QQQRALICEF YGPEFQVFKD RTQDIHIDKL 180
181 LIDHPEKRPS IMQNLWKTIE GSIAKGSIGF TMVHRAMLEF INHADSNEAK ELLNLTKELI 240
241 YEFVHTRDGS QVAMKLFALA NAKDRKVMLK SLRPYLIETA KDSYGHLVVV AALDCTDDTI 300
301 MTGKLLQAEF EGELLKLSAD KFARRILLYV LVGWEDARYF SKENRELLRS LDSLKAKTSK 360
361 KDPIVRRNEL KATIG
|
| Detection Method: | |
| Confidence: | 93.09691 |
| Match: | 1ib2A |
| Description: | Pumilio 1 |
Matching Structure (courtesy of the PDB): |
|
| Term | Confidence | Notes |
| binding | 2.43298635785702 | bayes_pls_golite062009 |
| protein binding | 1.50566694420704 | bayes_pls_golite062009 |
| RNA binding | 1.20550543134698 | bayes_pls_golite062009 |
| structural molecule activity | 1.20255343083458 | bayes_pls_golite062009 |
| nucleic acid binding | 0.169755106399802 | bayes_pls_golite062009 |
| cytoskeletal protein binding | 0.0330689772947346 | bayes_pls_golite062009 |
|
Region A: Residues: [487-642] |
1 11 21 31 41 51
| | | | | |
1 PLLISLISKA AGDMIAESLA SQVLVDALLY APCEKEEAVD ATLKAFDGNP EQDNHLIHQI 60
61 HCSRALKTLV QNGHWSGAEK QVVKAEDDLK VASKLIVIIK KYLVEWASGD GAFVVVAVLE 120
121 ALSDSEKQEF LKILRKHKNQ LNKSEFRGTK KLLEML
|
| Detection Method: | |
| Confidence: | 1.04 |
| Match: | 1ib2A |
| Description: | Pumilio 1 |
| Matching Structure (courtesy of the PDB): |
|
