YRC Public Data Repository - Protein Structure Prediction

Protein:	YH56_SCHPO
Organism:	Schizosaccharomyces pombe 972h-
Length:	178 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

[What does the above image mean?]

[Show Ginzu Version Information]

Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for YH56_SCHPO.

Description	E-value	Query Range	Subject Range
CG12909-PA - This gene is referred to in FlyBase by the symbol Dmel\CG12909 (CG12909, FBgn0033507). It is a prote... gi\|220954206, gi... - gi\|220954206\|gb\|ACL89646.1\| CG12909-PA [synthetic construct], gi\|220944270\|gb\|ACL84678.1\| CG12909-PA...	158.0	[0..6]	[141..8]
gi\|39975421, gi\|... - gi\|39975421\|ref\|XP_369101.1\| hypothetical protein MGG_00143 [Magnaporthe grisea 70-15], gb\|EAA48485....	152.0	[0..7]	[104..9]
gi\|54635998, gi\|... - gi\|54635998\|gb\|EAL25401.1\| GA11899-PA [Drosophila pseudoobscura], gi\|125808676\|ref\|XP_001360826.1\| G...	150.0	[0..6]	[141..8]
gi\|71021411, gi\|... - gi\|71021411\|ref\|XP_760936.1\| hypothetical protein UM04789.1 [Ustilago maydis 521], ref\|XP_402404.1\| ...	143.0	[0..7]	[127..9]
YC16_YEAST - UPF0743 protein YCR087C-A OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=YCR087C-A PE=1... LUG1 - Putative protein of unknown function; green fluorescent protein (GFP)-fusion protein localizes to th...	135.0	[0..6]	[154..8]
gi\|34849506, gi\|... - gi\|41053431\|ref\|NP_956973.1\| Ly1 antibody reactive homolog [Danio rerio], gi\|34849506\|gb\|AAH58310.1\|...	130.0	[0..7]	[156..9]
gi\|26345614 - gi\|26345614\|dbj\|BAC36458.1\| unnamed protein product [Mus musculus]	128.0	[0..7]	[138..9]
gi\|32420533, gi\|... - gi\|32420533\|ref\|XP_330710.1\| hypothetical protein [Neurospora crassa], gi\|28926208\|gb\|EAA35191.1\| pr... gi\|85112861 - gi\|85112861\|ref\|XP_964427.1\| hypothetical protein NCU03274 [Neurospora crassa OR74A]	120.0	[0..6]	[67..8]
gi\|67971354 - gi\|67971354\|dbj\|BAE02019.1\| unnamed protein product [Macaca fascicularis]	119.0	[0..7]	[127..9]

Back

Predicted Domain #1

Region A:
Residues: [1-85]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MLTKLVCQDI IKKPKLDQHR SRCHGAYFTC IDCNTTFERT DYRNHTSCMT EAQRYQKGLY  60
   61 RPTKKELKKA KMNGNAVNSK ELSPN

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	21.69897
Match:	1wjvA
Description:	Solution structure of the N-terminal zinc finger domain of mouse cell growth regulating nucleolar protein LYAR
Matching Structure (courtesy of the PDB):

Predicted functions:

Term	Confidence	Notes
binding	1.72893576328611	bayes_pls_golite062009
nucleic acid binding	1.69485293197742	bayes_pls_golite062009
DNA binding	1.56529962350735	bayes_pls_golite062009
transcription regulator activity	1.34618935906821	bayes_pls_golite062009
transcription factor activity	0.482168429405299	bayes_pls_golite062009

Predicted Domain #2

Region A:
Residues: [86-178]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 TDNQNTPAGP TKHSLDENEK DKENKKSKKE TVSSPAEQLL ALTQNQEISL YKLLKKYNKQ  60
   61 ASKEDSLDSK EVLKHLAITA DAKGNYLVKP ITK

[Run NCBI BLAST on this sequence.]

Detection Method:

deduced

Shown below is our most confident de novo (Rosetta) prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits

Predicted functions: