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View Structure Prediction Details

Protein: LSB5_SCHPO
Organism: Schizosaccharomyces pombe 972h-
Length: 304 amino acids
Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16



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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for LSB5_SCHPO.

Description E-value Query
Range
Subject
Range
gi|73956037 - gi|73956037|ref|XP_864554.1| PREDICTED: similar to target of myb1-like 2 isoform 7 [Canis familiaris...
270.0 [0..7] [287..6]
gi|26335515 - gi|26335515|dbj|BAC31458.1| unnamed protein product [Mus musculus]
266.0 [0..7] [287..6]
gi|50755599 - gi|50755599|ref|XP_414813.1| PREDICTED: similar to RIKEN cDNA A730055F12; target of myb1-like 2; myb...
261.0 [0..7] [287..473]

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Predicted Domain #1
Region A:
Residues: [1-162]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MGIFSETVPI TAVTTYIDRL TSRDTDDEDL SGIVQLSEAV NLTVTGPREA SRTLRKKLKY  60
   61 STPHEQVRAL VILQALIENA GSHFLQNFSD EKLEDRMLQC ATNSEYSKPV RKRAIHMIKL 120
  121 WHNDYSNVRG MESMSSLVSR LPQRQSSASH SEQPTINLKK VG

[Run NCBI BLAST on this sequence.]

Detection Method: PSI-BLAST
Confidence: 50.39794
Match: 1x5bA
Description: The solution structure of the VHS domain of human Signal transducing adaptor molecule 2
Matching Structure (courtesy of the PDB):

Predicted Domain #2
Region A:
Residues: [163-304]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 PILERLIASS SMAATNLSNS LVRINPNTEN PAKNKQIMVY YVDCKRAHRS LLRYIQAIQD  60
   61 EMWLANLLKA NDEIVTAIDA FKEKCSENSD YSSDSGSYSS SYSRHLDDRA SYISRSSSGG 120
  121 SNAQRSEDLD VNNPFGDHNR LE

[Run NCBI BLAST on this sequence.]

Detection Method: PSI-BLAST
Confidence: 16.522879
Match: 1oxzA
Description: ADP-ribosylation factor binding protein Gga1
Matching Structure (courtesy of the PDB):

Predicted functions:

Term Confidence Notes
clathrin binding 4.2165986983076 bayes_pls_golite062009
phosphatidylinositol-4,5-bisphosphate binding 2.2854866638753 bayes_pls_golite062009
binding 2.00372346360794 bayes_pls_golite062009
protein binding 1.76598379050768 bayes_pls_golite062009
phosphoinositide binding 1.69886980741044 bayes_pls_golite062009
phospholipid binding 1.35873451348399 bayes_pls_golite062009
lipid binding 0.681936854618139 bayes_pls_golite062009
phosphatidylinositol binding 0.10007172207713 bayes_pls_golite062009

YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle