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View Structure Prediction Details

Protein: YIP6_SCHPO
Organism: Schizosaccharomyces pombe 972h-
Length: 381 amino acids
Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16



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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for YIP6_SCHPO.

Description E-value Query
Range
Subject
Range
scramb1-PC - The gene scramblase 1 is referred to in FlyBase by the symbol Dmel\scramb1 (CG32056, FBgn0052056). I...
348.0 [0..1] [306..38]
PLS1_RAT - Phospholipid scramblase 1 OS=Rattus norvegicus GN=Plscr1 PE=1 SV=1
315.0 [0..43] [306..83]
PLS2_BOVIN - Phospholipid scramblase 2 OS=Bos taurus GN=PLSCR2 PE=2 SV=1
312.0 [0..43] [307..48]
orf19.3929 - orf19.3929 CGDID:CAL0002913 Assembly 19, Contig19-10194 (57275, 58312) CDS, translated using codon t...
gi|68468000, gi|... - gi|68468000|ref|XP_721839.1| hypothetical protein CaO19.3929 [Candida albicans SC5314], gi|46443780|...
312.0 [0..15] [322..31]
gi|62471433 - gi|62471433|gb|AAH93497.1| Plscr1 protein [Mus musculus]
310.0 [0..44] [306..83]

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Predicted Domain #1
Region A:
Residues: [1-304]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MLEILWANIT PIQTFVSSNH LTMLYGLKRF GCRLYHHSKS TRYIDATAKV VSQEPAAISS  60
   61 TGAIPLNSPA APLLSQDVLI VERQLEMMNV FLGYEQANRY VILNQQGQHL GYIAEQGASS 120
  121 ILSSLSRQFF HTHRAFKADV MDSNGQLVLQ LNRPFSWINS RLQIHSIDYS KFSSTLVGEV 180
  181 LQKWHLWRRR YELFLAKRSM FEQFAKIDER VLSWEFLLRN EQDRILGSVS RNFMGLPREF 240
  241 FTDTGNYVLR FTSTSAANGS VNENQLLQAA HGIANDVCAR DMSLEERAVM LGSAVTIDFD 300
  301 YFSR

[Run NCBI BLAST on this sequence.]

Detection Method: FFAS03
Confidence: 1.88
Match: 1zxuA
Description: X-ray structure of protein from arabidopsis thaliana AT5G01750
Matching Structure (courtesy of the PDB):

Predicted functions:

Term Confidence Notes
binding 1.26911599886926 bayes_pls_golite062009
protein binding 0.6155304260359 bayes_pls_golite062009
receptor activity 0.282498618245369 bayes_pls_golite062009
transmembrane receptor activity 0.253740491669625 bayes_pls_golite062009

Predicted Domain #2
Region A:
Residues: [305-381]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 IHGGPALGLN IPFMFGGSSS NHDYPAEDLS AQEILKNDQE TTPSTNDSSS ETKSPFLSDA  60
   61 DLDQQDFWDI FDRDGDD

[Run NCBI BLAST on this sequence.]

Detection Method: deduced

Shown below is our most confident de novo (Rosetta) prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.


YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle