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View Structure Prediction Details

Protein: SDA1_SCHPO
Organism: Schizosaccharomyces pombe 972h-
Length: 719 amino acids
Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16



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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for SDA1_SCHPO.

Description E-value Query
Range
Subject
Range
h0019320 - null
gi|195934741 - gi|195934741|gb|AAI68370.1| SDA1 domain containing 1 [synthetic construct]
gi|114594177 - gi|114594177|ref|XP_001152561.1| PREDICTED: hypothetical protein isoform 6 [Pan troglodytes]
gi|119626166, gi... - gi|153791300|ref|NP_060585.2| SDA1 domain containing 1 [Homo sapiens], gi|119626166|gb|EAX05761.1| S...
857.0 [0..10] [719..9]
gi|109074438 - gi|109074438|ref|XP_001099342.1| PREDICTED: similar to SDA1 domain containing 1 isoform 3 [Macaca mu...
820.0 [0..10] [719..9]
SDA1_MOUSE - Protein SDA1 homolog OS=Mus musculus GN=Sdad1 PE=1 SV=1
810.0 [0..10] [719..9]
gi|50746659 - gi|50746659|ref|XP_420597.1| PREDICTED: similar to SDA1 domain containing 1 [Gallus gallus]
807.0 [0..10] [718..9]
SDA1_RAT - Protein SDA1 homolog OS=Rattus norvegicus GN=Sdad1 PE=1 SV=1
gi|55741772 - ref|NP_001006959.1| SDA1 domain containing 1 [Rattus norvegicus]
805.0 [0..10] [719..9]
orf19.6648, orf1... - orf19.6648 CGDID:CAL0004046 Assembly 19, Contig19-10251 (36520, 34241) CDS, reverse complemented, tr...
gi|68487942, gi|... - gi|68488939|ref|XP_711714.1| hypothetical protein CaO19.6648 [Candida albicans SC5314], gi|68487942|...
804.0 [0..1] [717..1]

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Predicted Domain #1
Region A:
Residues: [1-113]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MVKRRTAAVL PNNLPHLQHL VKKDPKSYRE EFLQQWNHYE TAREIFLVNP SSDISEFCSL  60
   61 IDFISQTCNY YHDVTADFPS ELIELLQKNH TIFPFELCEK IVLCLVLLKN KTV

[Run NCBI BLAST on this sequence.]

Detection Method: MSA

Shown below is our most confident prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

Predicted Domain #2
Region A:
Residues: [114-185]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 ISPITLLQCF FPLFRENPTR GVRELLYQQV SLTIRNANKQ AKNDKLNKAV QSALFTLVDG  60
   61 SGSGSATHTD YS

[Run NCBI BLAST on this sequence.]

Detection Method: deduced

Shown below is our most confident de novo (Rosetta) prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

Predicted Domain #3
Region A:
Residues: [186-300]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 GQKREYSASE LSGVWAVKMV RDLWKRNVWS GDARAVNIMK SAALSSNPKV MLAGIYFFLG  60
   61 ADNQEEEEES DDEGPDVSKL LHQANVNKKT KSREAALLRA RAVVKKKERG KQNVP

[Run NCBI BLAST on this sequence.]

Detection Method: deduced

Shown below is our most confident de novo (Rosetta) prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

Predicted Domain #4
Region A:
Residues: [301-466]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 TNVNFPALQL LHDPQGFAEE LFEKHLASSK SRLSMDQKLV VLRLLTRLVG SHKLTVLGLY  60
   61 SFLMKYLTPH QRDVTQFLAC LAQASHEFVP PDALEPLVRK IADEFVTSGV ANEVVCAGIN 120
  121 AIREVCARAP LAMTPDLLQD LTEYKSSKDK GVMMASRSLI TLYREV

[Run NCBI BLAST on this sequence.]

Detection Method: deduced

Shown below is our most confident de novo (Rosetta) prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

Predicted Domain #5
Region A:
Residues: [467-555]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 APDMLKRKDR GKLASIEMKD RTPLKYGEEL NVTHGIQGLE LLAQYKAEHG EEGENGDDWD  60
   61 NWEVSEDGQN SDDSGGWIDV DSDDNIELS

[Run NCBI BLAST on this sequence.]

Detection Method: MSA

Shown below is our most confident prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

Predicted Domain #6
Region A:
Residues: [556-719]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 DSDEEEEKAT ARKESDEKGS SSQKELVDRM TELASQSILT PNDLKKLEEL REQAGVDRLV  60
   61 NGPKRSLKRP DDAVEADEIE GPRKKAKNDR EARIASVMEG REGRDKFSSK KAGFNPTSLS 120
  121 NKRKQRNKNF MMIKHKLKGK AGRSLVQKQK VLREHVAREK RKIK

[Run NCBI BLAST on this sequence.]

Detection Method: MSA

Shown below is our most confident prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.


YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle