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View Structure Prediction Details

Protein: SDA1_SCHPO
Organism: Schizosaccharomyces pombe 972h-
Length: 719 amino acids
Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16



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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for SDA1_SCHPO.

Description E-value Query
Range
Subject
Range
h0019320 - null
gi|195934741 - gi|195934741|gb|AAI68370.1| SDA1 domain containing 1 [synthetic construct]
gi|114594177 - gi|114594177|ref|XP_001152561.1| PREDICTED: hypothetical protein isoform 6 [Pan troglodytes]
gi|119626166, gi... - gi|153791300|ref|NP_060585.2| SDA1 domain containing 1 [Homo sapiens], gi|119626166|gb|EAX05761.1| S...
857.0 [0..10] [719..9]
gi|109074438 - gi|109074438|ref|XP_001099342.1| PREDICTED: similar to SDA1 domain containing 1 isoform 3 [Macaca mu...
820.0 [0..10] [719..9]
SDA1_MOUSE - Protein SDA1 homolog OS=Mus musculus GN=Sdad1 PE=1 SV=1
810.0 [0..10] [719..9]
gi|50746659 - gi|50746659|ref|XP_420597.1| PREDICTED: similar to SDA1 domain containing 1 [Gallus gallus]
807.0 [0..10] [718..9]
SDA1_RAT - Protein SDA1 homolog OS=Rattus norvegicus GN=Sdad1 PE=1 SV=1
gi|55741772 - ref|NP_001006959.1| SDA1 domain containing 1 [Rattus norvegicus]
805.0 [0..10] [719..9]
orf19.6648, orf1... - orf19.6648 CGDID:CAL0004046 Assembly 19, Contig19-10251 (36520, 34241) CDS, reverse complemented, tr...
gi|68487942, gi|... - gi|68488939|ref|XP_711714.1| hypothetical protein CaO19.6648 [Candida albicans SC5314], gi|68487942|...
804.0 [0..1] [717..1]

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Predicted Domain #1
Region A:
Residues: [1-113]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MVKRRTAAVL PNNLPHLQHL VKKDPKSYRE EFLQQWNHYE TAREIFLVNP SSDISEFCSL  60
   61 IDFISQTCNY YHDVTADFPS ELIELLQKNH TIFPFELCEK IVLCLVLLKN KTV

[Run NCBI BLAST on this sequence.]

Detection Method: MSA

Shown below are all of our structure predictions for this domain.
Click here to view only most confident match.

Found no structure predictions for this domain.

Predicted Domain #2
Region A:
Residues: [114-185]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 ISPITLLQCF FPLFRENPTR GVRELLYQQV SLTIRNANKQ AKNDKLNKAV QSALFTLVDG  60
   61 SGSGSATHTD YS

[Run NCBI BLAST on this sequence.]

Detection Method: deduced

Shown below are all of our de novo (Rosetta) predictions for this domain.
Click here to view only most confident match.

Found no structure predictions for this domain.

Predicted Domain #3
Region A:
Residues: [186-300]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 GQKREYSASE LSGVWAVKMV RDLWKRNVWS GDARAVNIMK SAALSSNPKV MLAGIYFFLG  60
   61 ADNQEEEEES DDEGPDVSKL LHQANVNKKT KSREAALLRA RAVVKKKERG KQNVP

[Run NCBI BLAST on this sequence.]

Detection Method: deduced

Shown below are all of our de novo (Rosetta) predictions for this domain.
Click here to view only most confident match.

Found no structure predictions for this domain.

Predicted Domain #4
Region A:
Residues: [301-466]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 TNVNFPALQL LHDPQGFAEE LFEKHLASSK SRLSMDQKLV VLRLLTRLVG SHKLTVLGLY  60
   61 SFLMKYLTPH QRDVTQFLAC LAQASHEFVP PDALEPLVRK IADEFVTSGV ANEVVCAGIN 120
  121 AIREVCARAP LAMTPDLLQD LTEYKSSKDK GVMMASRSLI TLYREV

[Run NCBI BLAST on this sequence.]

Detection Method: deduced

Shown below are all of our de novo (Rosetta) predictions for this domain.
Click here to view only most confident match.

Found no structure predictions for this domain.

Predicted Domain #5
Region A:
Residues: [467-555]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 APDMLKRKDR GKLASIEMKD RTPLKYGEEL NVTHGIQGLE LLAQYKAEHG EEGENGDDWD  60
   61 NWEVSEDGQN SDDSGGWIDV DSDDNIELS

[Run NCBI BLAST on this sequence.]

Detection Method: MSA

Shown below are all of our structure predictions for this domain.
Click here to view only most confident match.

Found no structure predictions for this domain.

Predicted Domain #6
Region A:
Residues: [556-719]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 DSDEEEEKAT ARKESDEKGS SSQKELVDRM TELASQSILT PNDLKKLEEL REQAGVDRLV  60
   61 NGPKRSLKRP DDAVEADEIE GPRKKAKNDR EARIASVMEG REGRDKFSSK KAGFNPTSLS 120
  121 NKRKQRNKNF MMIKHKLKGK AGRSLVQKQK VLREHVAREK RKIK

[Run NCBI BLAST on this sequence.]

Detection Method: MSA

Shown below are all of our structure predictions for this domain.
Click here to view only most confident match.

Found no structure predictions for this domain.


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Created and Maintained by: Michael Riffle