YRC Public Data Repository - Protein Structure Prediction

Protein:	BUD20_SCHPO
Organism:	Schizosaccharomyces pombe 972h-
Length:	124 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for BUD20_SCHPO.

Description	E-value	Query Range	Subject Range
gi\|68386573 - gi\|68386573\|ref\|XP_687778.1\| PREDICTED: similar to Zinc finger protein 593 (Zinc finger protein T86)...	151.0	[0..1]	[114..1]
gi\|73950573 - gi\|73950573\|ref\|XP_544486.2\| PREDICTED: similar to Zinc finger protein 593 (Zinc finger protein T86)...	150.0	[0..1]	[115..46]
gi\|42553726, gi\|... - gi\|46127149\|ref\|XP_388128.1\| hypothetical protein FG07952.1 [Gibberella zeae PH-1], gi\|42553726\|gb\|E...	150.0	[0..13]	[124..4]
gi\|114554837 - gi\|114554837\|ref\|XP_513225.2\| PREDICTED: zinc finger protein LOC51042 [Pan troglodytes] ZNF593 - zinc finger protein 593	149.0	[0..1]	[116..1]
gi\|27735411 - gi\|27735411\|gb\|AAH41548.1\| LOC398463 protein [Xenopus laevis]	145.0	[0..1]	[109..6]
ZN593_MOUSE - Zinc finger protein 593 OS=Mus musculus GN=Znf593 PE=1 SV=2	145.0	[0..1]	[116..1]
gi\|61879255 - gi\|61879255\|ref\|XP_585257.1\| PREDICTED: similar to zinc finger protein 593 [Bos taurus]	144.0	[0..1]	[116..1]
gi\|109477470, gi... - gi\|27716247\|ref\|XP_216542.1\| PREDICTED: similar to zinc finger protein 593 [Rattus norvegicus], gi\|1...	144.0	[0..1]	[116..1]
gi\|53134784, gi\|... - gi\|57529455\|ref\|NP_001006307.1\| zinc finger protein 593 [Gallus gallus], gi\|53134784\|emb\|CAG32363.1\|...	143.0	[0..4]	[124..6]

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Predicted Domain #1

Region A:
Residues: [1-124]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MGRVARKRKH HSNGNHALFR TRVYGRDLDQ IHNDLTESEK FDKLPIDPDL PGLGQHYCIE  60
   61 CARYFDSSQA LLVHKKGKVH KRRLKNLREE PYTQEEAEAA VNIGQPKQSV ASKLADNSNV 120
  121 VMAD

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	33.221849
Match:	1zr9A
Description:	Solution Structure of a Human C2H2-type Zinc Finger Protein
Matching Structure (courtesy of the PDB):

Predicted functions:

Term	Confidence	Notes
binding	1.72893576328611	bayes_pls_golite062009
nucleic acid binding	1.69485293197742	bayes_pls_golite062009
DNA binding	1.56529962350735	bayes_pls_golite062009
transcription regulator activity	1.34618935906821	bayes_pls_golite062009
transcription factor activity	0.482168429405299	bayes_pls_golite062009

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits

Predicted functions: