YRC Public Data Repository - Protein Structure Prediction

Protein:	gi\|108807731, gi...
Organism:	Yersinia pestis Antiqua
Length:	218 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|108807731, gi....

Description	E-value	Query Range	Subject Range
gi\|152961617, gi... - gi\|77629375\|ref\|ZP_00791961.1\| COG0307: Riboflavin synthase alpha chain [Yersinia pseudotuberculosis...	4.0E-87	[1..218]	[1..218]
gi\|145598059, gi... - gi\|145598059\|ref\|YP_001162135.1\| riboflavin synthase subunit alpha [Yersinia pestis Pestoides F], gi... Q66A28\|Q66A28_YERPS - Riboflavin synthase alpha chain - Yersinia pseudotuberculosis gi\|51589910, gi\|... - gi\|51596628\|ref\|YP_070819.1\| riboflavin synthase subunit alpha [Yersinia pseudotuberculosis IP 32953... gi\|186895684, gi... - gi\|186895684\|ref\|YP_001872796.1\| riboflavin synthase subunit alpha [Yersinia pseudotuberculosis PB1/...	1.0E-86	[1..218]	[1..218]
gi\|238787134, gi... - gi\|77975295\|ref\|ZP_00830831.1\| COG0307: Riboflavin synthase alpha chain [Yersinia frederiksenii ATCC...	4.0E-81	[1..216]	[1..216]
gi\|238796360, gi... - gi\|77961726\|ref\|ZP_00825558.1\| COG0307: Riboflavin synthase alpha chain [Yersinia mollaretii ATCC 43...	6.0E-81	[1..216]	[1..216]
gi\|238716500, gi... - gi\|77959197\|ref\|ZP_00823219.1\| COG0307: Riboflavin synthase alpha chain [Yersinia bercovieri ATCC 43...	2.0E-79	[1..216]	[1..216]
gi\|238792300, gi... - gi\|77979571\|ref\|ZP_00834989.1\| COG0307: Riboflavin synthase alpha chain [Yersinia intermedia ATCC 29...	4.0E-79	[1..212]	[1..213]
gi\|26108314, gi\|... - gi\|26247911\|ref\|NP_753951.1\| riboflavin synthase subunit alpha [Escherichia coli CFT073], gi\|2610831... gi\|190906311, gi... - gi\|75238779\|ref\|ZP_00722763.1\| COG0307: Riboflavin synthase alpha chain [Escherichia coli F11], gi\|1... gi\|110343377, gi... - gi\|110641785\|ref\|YP_669515.1\| riboflavin synthase subunit alpha [Escherichia coli 536], gi\|110343377... gi\|227837099, gi... - gi\|227885920\|ref\|ZP_04003725.1\| riboflavin synthase subunit alpha [Escherichia coli 83972], gi\|22783...	1.0E-78	[1..206]	[1..206]
gi\|187733834, gi... - gi\|75175189\|ref\|ZP_00695507.1\| COG0307: Riboflavin synthase alpha chain [Shigella boydii BS512], gi\|... gi\|75190701, gi\|... - gi\|75190701\|ref\|ZP_00703968.1\| COG0307: Riboflavin synthase alpha chain [Escherichia coli E24377A], ... gi\|83584597, gi\|... - gi\|83584597\|ref\|ZP_00923267.1\| COG0307: Riboflavin synthase alpha chain [Escherichia coli 101-1], gi... gi\|193071595, gi... - gi\|75214854\|ref\|ZP_00713337.1\| COG0307: Riboflavin synthase alpha chain [Escherichia coli E110019], ... gi\|190904078, gi... - gi\|75230890\|ref\|ZP_00717339.1\| COG0307: Riboflavin synthase alpha chain [Escherichia coli B7A], gi\|1... gi\|157161128, gi... - gi\|75195741\|ref\|ZP_00705811.1\| COG0307: Riboflavin synthase alpha chain [Escherichia coli HS], gi\|15... gi\|194415998, gi... - gi\|75212998\|ref\|ZP_00712996.1\| COG0307: Riboflavin synthase alpha chain [Escherichia coli B171], gi\|... gi\|218427171, gi... - gi\|218689607\|ref\|YP_002397819.1\| riboflavin synthase subunit alpha [Escherichia coli ED1a], gi\|21842... gi\|218351957, gi... - gi\|218695225\|ref\|YP_002402892.1\| riboflavin synthase subunit alpha [Escherichia coli 55989], gi\|2183... gi\|218699770, gi... - gi\|218699770\|ref\|YP_002407399.1\| riboflavin synthase subunit alpha [Escherichia coli IAI39], gi\|2183... gi\|218432259, gi... - gi\|218705162\|ref\|YP_002412681.1\| riboflavin synthase subunit alpha [Escherichia coli UMN026], gi\|218... gi\|115512968, gi... - gi\|117623844\|ref\|YP_852757.1\| riboflavin synthase subunit alpha [Escherichia coli APEC O1], gi\|11551... gi\|124531607, gi... - gi\|124531607\|ref\|ZP_01701818.1\| riboflavin synthase, alpha subunit [Escherichia coli B], gi\|12449846... gi\|89108504, gi\|... - gi\|89108504\|ref\|AP_002284.1\| riboflavin synthase, alpha subunit [Escherichia coli str. K-12 substr. ... gi\|91210876, gi\|... - gi\|91210876\|ref\|YP_540862.1\| riboflavin synthase subunit alpha [Escherichia coli UTI89], gi\|91072450... RISA_ECOLI - Riboflavin synthase alpha chain (EC 2.5.1.9) - Escherichia coli gi\|110615188, gi... - gi\|110805640\|ref\|YP_689160.1\| riboflavin synthase subunit alpha [Shigella flexneri 5 str. 8401], gi\|... gi\|237705610, gi... - gi\|237705610\|ref\|ZP_04536091.1\| riboflavin synthase subunit alpha [Escherichia sp. 3_2_53FAA], gi\|22... EG11406 - riboflavin synthase, alpha subunit / Riboflavin synthase; homotrimer; associated with RibE 60-mer gi\|238900879, gi... - gi\|238900879\|ref\|YP_002926675.1\| riboflavin synthase, alpha subunit [Escherichia coli BW2952], gi\|23... gi\|251785119, gi... - gi\|251785119\|ref\|YP_002999423.1\| hypothetical protein B21_01623 [Escherichia coli BL21], gi\|24237739... gi\|253773379, gi... - gi\|254288514\|ref\|YP_003054262.1\| riboflavin synthase subunit alpha [Escherichia coli BL21(DE3)], gi\|... gi\|254161725, gi... - gi\|254161725\|ref\|YP_003044833.1\| riboflavin synthase subunit alpha [Escherichia coli B str. REL606],... gi\|30063178, gi\|... - gi\|30063178\|ref\|NP_837349.1\| riboflavin synthase subunit alpha [Shigella flexneri 2a str. 2457T], gi... EG11406 - riboflavin synthase, alpha subunit / Riboflavin synthase; homotrimer; associated with RibE 60-mer RISA_SHIFL - Riboflavin synthase OS=Shigella flexneri GN=ribE PE=3 SV=1 gi\|24113052, gi\|... - gi\|24113052\|ref\|NP_707562.1\| riboflavin synthase subunit alpha [Shigella flexneri 2a str. 301], gi\|2... gi\|169754914, gi... - gi\|170019986\|ref\|YP_001724940.1\| riboflavin synthase subunit alpha [Escherichia coli ATCC 8739], gi\|... gi\|169889159, gi... - gi\|170081324\|ref\|YP_001730644.1\| riboflavin synthase, alpha subunit [Escherichia coli str. K-12 subs... gi\|170521426, gi... - gi\|170683708\|ref\|YP_001743590.1\| riboflavin synthase, alpha subunit [Escherichia coli SMS-3-5], gi\|1... gi\|209918977, gi... - gi\|209918977\|ref\|YP_002293061.1\| riboflavin synthase subunit alpha [Escherichia coli SE11], gi\|20991... gi\|215264911, gi... - gi\|215486839\|ref\|YP_002329270.1\| riboflavin synthase subunit alpha [Escherichia coli O127:H6 str. E2... gi\|218554230, gi... - gi\|218554230\|ref\|YP_002387143.1\| riboflavin synthase subunit alpha [Escherichia coli IAI1], gi\|21836... gi\|218365302, gi... - gi\|218558533\|ref\|YP_002391446.1\| riboflavin synthase subunit alpha [Escherichia coli S88], gi\|218365... gi\|73855488, gi\|... - gi\|74312011\|ref\|YP_310430.1\| riboflavin synthase subunit alpha [Shigella sonnei Ss046], gi\|73855488\|... gi\|81241286, gi\|... - gi\|82777138\|ref\|YP_403487.1\| riboflavin synthase subunit alpha [Shigella dysenteriae Sd197], gi\|8124... gi\|192927457, gi... - gi\|75257081\|ref\|ZP_00728641.1\| COG0307: Riboflavin synthase alpha chain [Escherichia coli E22], gi\|1... gi\|188490072, gi... - gi\|75512904\|ref\|ZP_00735385.1\| COG0307: Riboflavin synthase alpha chain [Escherichia coli 53638], gi... gi\|81245379, gi\|... - gi\|82543968\|ref\|YP_407915.1\| riboflavin synthase subunit alpha [Shigella boydii Sb227], gi\|81245379\|...	2.0E-78	[1..206]	[1..206]
gi\|15831625, gi\|... - gi\|15831625\|ref\|NP_310398.1\| riboflavin synthase subunit alpha [Escherichia coli O157:H7], gi\|133618... gi\|188013792, gi... - gi\|188013792\|gb\|EDU51914.1\| riboflavin synthase, alpha subunit [Escherichia coli O157:H7 str. EC4113... gi\|25287076, gi\|... - pir\|\|G85773 riboflavin synthase, alpha chain [imported] - Escherichia coli (strain O157:H7, substrai... gi\|12515660, gi\|... - gi\|15802076\|ref\|NP_288098.1\| riboflavin synthase subunit alpha [Escherichia coli O157:H7 EDL933], gi... gi\|195940242 - gi\|195940242\|ref\|ZP_03085624.1\| riboflavin synthase subunit alpha [Escherichia coli O157:H7 str. EC4... gi\|168802902, gi... - gi\|189375261\|gb\|EDU93677.1\| riboflavin synthase, alpha subunit [Escherichia coli O157:H7 str. EC508]... gi\|168783936, gi... - gi\|188998810\|gb\|EDU67796.1\| riboflavin synthase, alpha subunit [Escherichia coli O157:H7 str. EC4076... gi\|189359620, gi... - gi\|189359620\|gb\|EDU78039.1\| riboflavin synthase, alpha subunit [Escherichia coli O157:H7 str. EC4486... gi\|15831625, gi\|... - gi\|15831625\|ref\|NP_310398.1\| riboflavin synthase subunit alpha [Escherichia coli O157:H7 str. Sakai]... gi\|217318076, gi... - gi\|217328729\|ref\|ZP_03444810.1\| riboflavin synthase, alpha subunit [Escherichia coli O157:H7 str. TW... gi\|209158023, gi... - gi\|209396623\|ref\|YP_002270732.1\| riboflavin synthase, alpha subunit [Escherichia coli O157:H7 str. E... gi\|208738300, gi... - gi\|208818177\|ref\|ZP_03258497.1\| riboflavin synthase, alpha subunit [Escherichia coli O157:H7 str. EC... gi\|208731032, gi... - gi\|208816689\|ref\|ZP_03257809.1\| riboflavin synthase, alpha subunit [Escherichia coli O157:H7 str. EC... gi\|254592681, gi... - gi\|254793281\|ref\|YP_003078118.1\| riboflavin synthase, alpha subunit [Escherichia coli O157:H7 str. T...	3.0E-78	[1..206]	[1..206]
gi\|37526501, gi\|... - gi\|37526501\|ref\|NP_929845.1\| riboflavin synthase subunit alpha [Photorhabdus luminescens subsp. laum...	7.0E-78	[1..204]	[1..204]

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Predicted Domain #1

Region A:
Residues: [1-218]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MFTGIVQGTG LVVAIEEKSN FRTHVVELPI DMLPELALGA SVAHNGCCLT VTHIEGNRVS  60
   61 FDLMKETLRL TNLGDINVGD KVNLERAAKF SDEIGGHLMS GHIICTAEIA KIYTSENNRQ 120
  121 IWFRMPSEDL MKYVLHKGFI GIDGISLTIG EVVGNRFCVH LIPETLSRTT LGKKRLGHRV 180
  181 NIEIDPQTQA VVDTVERVLA QRNIANAALV DEKFVRVS

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	80.0
Match:	1i8dA
Description:	Riboflavin synthase
Matching Structure (courtesy of the PDB):

Predicted functions:

Term	Confidence	Notes
riboflavin synthase activity	5.11500941509376	bayes_pls_golite062009
catalytic activity	2.05427820269334	bayes_pls_golite062009
transferase activity	0.708491789248912	bayes_pls_golite062009
binding	0.534066059984103	bayes_pls_golite062009

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits

Predicted functions: