YRC Public Data Repository - Protein Structure Prediction

Protein:	gi\|229681662, gi...
Organism:	Yersinia pestis Nepal516
Length:	212 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|229681662, gi....

Description	E-value	Query Range	Subject Range
gi\|77960046, gi\|... - gi\|77960046\|ref\|ZP_00823945.1\| COG0299: Folate-dependent phosphoribosylglycinamide formyltransferase...	1.0E-63	[1..212]	[1..212]
gi\|85694914, gi\|... - gi\|85711413\|ref\|ZP_01042472.1\| Folate-dependent phosphoribosylglycinamide formyltransferase [Idiomar...	6.0E-63	[1..212]	[1..212]
gi\|88795665, gi\|... - gi\|88795665\|ref\|ZP_01111358.1\| phosphoribosylglycinamide formyltransferase [Alteromonas macleodii 'D...	7.0E-63	[3..212]	[7..216]
gi\|77958968 - gi\|77958968\|ref\|ZP_00822993.1\| COG0299: Folate-dependent phosphoribosylglycinamide formyltransferase...	7.0E-63	[1..212]	[2..213]
gi\|77977642, gi\|... - gi\|77977642\|ref\|ZP_00833085.1\| COG0299: Folate-dependent phosphoribosylglycinamide formyltransferase...	2.0E-62	[1..212]	[1..212]
gi\|51597112, gi\|... - gi\|51597112\|ref\|YP_071303.1\| phosphoribosylglycinamide formyltransferase [Yersinia pseudotuberculosi... Q668E4\|Q668E4_YERPS - Putative phosphoribosylglycinamide formyltransferase - Yersinia pseudotuberculosis	6.0E-62	[1..212]	[1..212]
gi\|56460763, gi\|... - gi\|56460763\|ref\|YP_156044.1\| phosphoribosylglycinamide formyltransferase [Idiomarina loihiensis L2TR...	1.0E-61	[1..212]	[1..212]
gi\|89080493, gi\|... - gi\|89095239\|ref\|ZP_01168161.1\| phosphoribosylglycinamide formyltransferase [Oceanospirillum sp. MED9...	3.0E-61	[2..212]	[3..213]
gi\|37526651, gi\|... - gi\|37526651\|ref\|NP_929995.1\| phosphoribosylglycinamide formyltransferase 1 (GART) (GAR transformylas...	5.0E-61	[1..212]	[1..212]
gi\|238788123, gi... - gi\|77974627\|ref\|ZP_00830166.1\| COG0299: Folate-dependent phosphoribosylglycinamide formyltransferase...	1.0E-60	[1..212]	[1..212]

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Predicted Domain #1

Region A:
Residues: [1-212]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MKKIVVLISG QGSNLQALID AQQQGRISGK ISAVFSNNPA AYGLERAESA GIPHHALDAK  60
   61 AFTDRVSFDL ALAQAIDQYQ PDLLVLAGYM RILSPEFVKH YAGRMLNIHP SLLPKYPGLH 120
  121 THRQALENGD QEHGTSVHFV TEELDGGPVI LQAKVPIFSD DSEEDVAERV QTQEHSIYPL 180
  181 VVSWFTDGRL AMRDNAAWLD GVRLPLQGYA AE

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	60.30103
Match:	1c2tA
Description:	Glycinamide ribonucleotide transformylase, GART
Matching Structure (courtesy of the PDB):

Predicted functions:

Term	Confidence	Notes
methyltransferase activity	4.09881190860822	bayes_pls_golite062009
transferase activity, transferring one-carbon groups	4.01667310557403	bayes_pls_golite062009
hydroxymethyl-, formyl- and related transferase activity	3.81159871979977	bayes_pls_golite062009
glycine hydroxymethyltransferase activity	3.49010887242285	bayes_pls_golite062009
phosphoribosylglycinamide formyltransferase activity	2.94311083909314	bayes_pls_golite062009
methionyl-tRNA formyltransferase activity	2.39150724300118	bayes_pls_golite062009
catalytic activity	2.16003793103722	bayes_pls_golite062009
binding	1.1813924954238	bayes_pls_golite062009
transferase activity	1.01502594768782	bayes_pls_golite062009
ligase activity	0.922788719307786	bayes_pls_golite062009

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits

Predicted functions: