YRC Public Data Repository - Protein Structure Prediction

Protein:	SPR2E_MOUSE
Organism:	Mus musculus
Length:	76 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

[What does the above image mean?]

[Show Ginzu Version Information]

Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for SPR2E_MOUSE.

Description	E-value	Query Range	Subject Range
gi\|28379477, gi\|... - gi\|28379477\|ref\|NP_786369.1\| cell surface protein precursor [Lactobacillus plantarum WCFS1], gi\|2827...	118.0	[0..4]	[74..1174]
gi\|25388168 - pir\|\|F95013 pneumococcal surface protein A [imported] - Streptococcus pneumoniae (strain TIGR4) gi\|14971584, gi\|... - gi\|15900059\|ref\|NP_344663.1\| pneumococcal surface protein A [Streptococcus pneumoniae TIGR4], gi\|149...	98.0	[0..10]	[76..465]
gi\|116095803, gi... - gi\|116630221\|ref\|YP_815393.1\| hypothetical protein LGAS_1663 [Lactobacillus gasseri ATCC 33323], gi\|...	97.0	[0..4]	[76..2238]
TTN - titin	88.0	[0..4]	[76..10217]
gi\|94481968 - gi\|94481968\|gb\|ABF21668.1\| unknown [Human herpesvirus 3]	86.0	[0..13]	[75..2475]
gi\|42519684, gi\|... - gi\|42519684\|ref\|NP_965614.1\| hypothetical protein LJ0641 [Lactobacillus johnsonii NCC 533], gi\|41583...	80.0	[0..4]	[75..1228]
NFM_CHICK - Neurofilament medium polypeptide OS=Gallus gallus GN=NEFM PE=2 SV=2	76.0	[0..4]	[76..637]

Back

Predicted Domain #1

Region A:
Residues: [1-76]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSYQQQQCKQ PCQPPPVCPP KKCPEPCPHP QCPEPCPPPK CPEPCPEPCP PPSYQQKCPP  60
   61 VQPPPPCQQK CPPKSK

[Run NCBI BLAST on this sequence.]

Detection Method:

deduced

Shown below is our most confident de novo (Rosetta) prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits