YRC Public Data Repository - Protein Structure Prediction

Protein:	TBCA_MOUSE
Organism:	Mus musculus
Length:	108 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

[What does the above image mean?]

[Show Ginzu Version Information]

Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for TBCA_MOUSE.

Description	E-value	Query Range	Subject Range
gi\|109483017 - gi\|109483017\|ref\|XP_001068383.1\| PREDICTED: similar to tubulin cofactor a (predicted) [Rattus norveg...	127.0	[0..7]	[108..18]
gi\|30585151, gi\|... - gi\|61370238\|gb\|AAX43460.1\| tubulin-specific chaperone a [synthetic construct], gi\|30585151\|gb\|AAP368...	115.0	[0..1]	[108..1]
gi\|82958891, gi\|... - gi\|94400944\|ref\|XP_985743.1\| PREDICTED: similar to Tubulin-specific chaperone A (Tubulin-folding cof...	114.0	[0..1]	[108..1]
gi\|61360418, gi\|... - gi\|61360418\|gb\|AAX41859.1\| tubulin-specific chaperone a [synthetic construct], gi\|61360412\|gb\|AAX418... gi\|114599534, gi... - gi\|114599534\|ref\|XP_001142906.1\| PREDICTED: tubulin-specific chaperone a [Pan troglodytes], gi\|11459... TBCA - tubulin folding cofactor A	114.0	[0..1]	[108..1]
gi\|55233244, gi\|... - gi\|58394716\|ref\|XP_320905.2\| ENSANGP00000017649 [Anopheles gambiae str. PEST], gi\|55233244\|gb\|EAA015...	113.0	[0..1]	[105..1]
gi\|114688094 - gi\|114688094\|ref\|XP_520997.2\| PREDICTED: similar to cofactor A protein [Pan troglodytes]	113.0	[0..1]	[108..1]
gi\|109077705, gi... - gi\|109077705\|ref\|XP_001107593.1\| PREDICTED: similar to tubulin-specific chaperone a [Macaca mulatta]... gi\|67972002 - gi\|67972002\|dbj\|BAE02343.1\| unnamed protein product [Macaca fascicularis]	112.0	[0..1]	[108..1]
TBCA_BOVIN - Tubulin-specific chaperone A OS=Bos taurus GN=TBCA PE=1 SV=3	112.0	[0..1]	[108..1]

Back

Predicted Domain #1

Region A:
Residues: [1-108]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MADPRVRQIK IKTGVVRRLV KERVMYEKEA KQQEEKIEKM KAEDGENYAI KKQAEILQES  60
   61 RMMIPDCQRR LEAAYTDLQQ ILESEKDLEE AEEYKEARVV LDSVKLEA

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	26.39794
Match:	1h7cA
Description:	Tubulin chaperone cofactor A
Matching Structure (courtesy of the PDB):

Predicted functions:

Term	Confidence	Notes
chaperone binding	1.47792074338377	bayes_pls_golite062009
binding	1.01243510413122	bayes_pls_golite062009
protein binding	0.201520398401233	bayes_pls_golite062009

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits

Predicted functions: