YRC Public Data Repository - Protein Structure Prediction

Protein:	URM1
Organism:	Homo sapiens
Length:	101 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for URM1.

Description	E-value	Query Range	Subject Range
gi\|86605021 - gi\|86605021\|ref\|YP_473784.1\| MoaD family protein [Cyanobacteria bacterium Yellowstone A-Prime] gi\|86605021, gi\|... - gi\|86605021\|ref\|YP_473784.1\| MoaD family protein [Synechococcus sp. JA-3-3Ab], gi\|86553563\|gb\|ABC985...	1.0E-28	[5..101]	[1..91]
Y821_SYNY3 - Putative sulfur carrier protein slr0821 OS=Synechocystis sp. (strain PCC 6803 / Kazusa) GN=slr0821 P... gi\|7448944 - pir\|\|S75575 hypothetical protein slr0821 - Synechocystis sp. (strain PCC 6803) Y821_SYNY3 - Putative sulfur carrier protein slr0821 OS=Synechocystis sp. (strain ATCC 27184 / PCC 6803 / N-1) GN...	2.0E-28	[2..101]	[16..109]
gi\|56966838, gi\|... - gi\|56966838\|pdb\|1WGK\|A Chain A, Solution Structure Of Mouse Hypothetical Protein 2900073h19rik, gi\|1...	5.0E-28	[1..101]	[8..108]
gi\|86558784, gi\|... - gi\|86610242\|ref\|YP_479004.1\| MoaD family protein [Synechococcus sp. JA-2-3B'a(2-13)], gi\|86558784\|gb... gi\|86610242 - gi\|86610242\|ref\|YP_479004.1\| MoaD family protein [Cyanobacteria bacterium Yellowstone B-Prime]	1.0E-27	[5..101]	[1..91]
gi\|37521630, gi\|... - gi\|37521630\|ref\|NP_925007.1\| hypothetical protein gsl2061 [Gloeobacter violaceus PCC 7421], gi\|35212...	1.0E-27	[5..101]	[1..91]
URM1_BOVIN - Ubiquitin-related modifier 1 OS=Bos taurus GN=URM1 PE=3 SV=1 URM1_CAPHI - Ubiquitin-related modifier 1 OS=Capra hircus GN=URM1 PE=3 SV=1	2.0E-27	[1..101]	[1..101]
gi\|73967924 - gi\|73967924\|ref\|XP_850726.1\| PREDICTED: similar to CG33276-PA isoform 1 [Canis familiaris]	2.0E-27	[1..101]	[1..101]
gi\|109110232 - gi\|109110232\|ref\|XP_001118741.1\| PREDICTED: similar to CG33276-PA [Macaca mulatta] CCDS6900.1_1 - null	2.0E-27	[1..101]	[1..101]

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Predicted Domain #1

Region A:
Residues: [1-101]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MAAPLSVEVE FGGGAELLFD GIKKHRVTLP GQEEPWDIRN LLIWIKKNLL KERPELFIQG  60
   61 DSVRPGILVL INDADWELLG ELDYQLQDQD SVLFISTLHG G

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	29.69897
Match:	1wgkA
Description:	Solution Structure of Mouse Hypothetical Protein 2900073H19RIK
Matching Structure (courtesy of the PDB):

Predicted functions:

Term	Confidence	Notes
peptidase activity	1.67455005995579	bayes_pls_golite062009
peptidase activity, acting on L-amino acid peptides	1.41301404346468	bayes_pls_golite062009
binding	1.22452676406981	bayes_pls_golite062009
endopeptidase activity	1.13340267982546	bayes_pls_golite062009
protein tag	1.11801268956151	bayes_pls_golite062009
serine hydrolase activity	0.724325251139727	bayes_pls_golite062009
serine-type endopeptidase activity	0.722279806899284	bayes_pls_golite062009
serine-type peptidase activity	0.706571817325848	bayes_pls_golite062009
hydrolase activity	0.367195794753195	bayes_pls_golite062009
catalytic activity	0.244781231950403	bayes_pls_golite062009
protein binding	0.159307080736588	bayes_pls_golite062009

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits

Predicted functions: