| Protein: | HNRPD |
| Organism: | Homo sapiens |
| Length: | 355 amino acids |
| Reference: | Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16 |
Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for HNRPD.
| Description | E-value | Query Range |
Subject Range |
|
|
8.0E-51 | [9..350] | [108..464] |
|
|
2.0E-50 | [9..350] | [108..463] |
|
|
3.0E-50 | [9..346] | [108..460] |
|
Region A: Residues: [1-83] |
1 11 21 31 41 51
| | | | | |
1 MSEEQFGGDG AAAAATAAVG GSAGEQEGAM VAATQGAAAA AGSGAGTGGG TASGGTEGGS 60
61 AESEGAKIDA SKNEEDEGHS NSS
|
| Detection Method: |  |
| Confidence: | 8.0 |
| Match: | 1qm9A |
| Description: | Polypyrimidine tract-binding protein |
Matching Structure (courtesy of the PDB): |
|
| Term | Confidence | Notes |
| binding | 0.950788308762215 | bayes_pls_golite062009 |
| nucleic acid binding | 0.29562225149076 | bayes_pls_golite062009 |
|
Region A: Residues: [84-273] |
1 11 21 31 41 51
| | | | | |
1 PRHSEAATAQ REEWKMFIGG LSWDTTKKDL KDYFSKFGEV VDCTLKLDPI TGRSRGFGFV 60
61 LFKESESVDK VMDQKEHKLN GKVIDPKRAK AMKTKEPVKK IFVGGLSPDT PEEKIREYFG 120
121 GFGEVESIEL PMDNKTNKRR GFCFITFKEE EPVKKIMEKK YHNVGLSKCE IKVAMSKEQY 180
181 QQQQQWGSRG
|
| Detection Method: | |
| Confidence: | 36.154902 |
| Match: | 1pgzA |
| Description: | Crystal Structure of UP1 Complexed With d(TTAGGGTTAG(6-MI)G); A Human Telomeric Repeat Containing 6-methyl-8-(2-deoxy-beta-ribofuranosyl)isoxanthopteridine (6-MI) |
Matching Structure (courtesy of the PDB): |
|
| Term | Confidence | Notes |
| binding | 0.950788308762215 | bayes_pls_golite062009 |
| nucleic acid binding | 0.29562225149076 | bayes_pls_golite062009 |
|
Region A: Residues: [274-355] |
1 11 21 31 41 51
| | | | | |
1 GFAGRARGRG GGPSQNWNQG YSNYWNQGYG NYGYNSQGYG GYGGYDYTGY NNYYGYGDYS 60
61 NQQSGYGKVS RRGGHQNSYK PY
|
| Detection Method: | |
Shown below is our most confident de novo (Rosetta) prediction for this domain.
Click here to view all matches.
Found no confident structure predictions for this domain.
