YRC Public Data Repository - Protein Structure Prediction

Protein:	MRPS10
Organism:	Homo sapiens
Length:	201 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for MRPS10.

Description	E-value	Query Range	Subject Range
gi\|7022681 - gi\|7022681\|dbj\|BAA91686.1\| unnamed protein product [Homo sapiens]	2.0E-67	[1..201]	[1..201]
RT10_PONPY - Mitochondrial 28S ribosomal protein S10 - Pongo pygmaeus (Orangutan) RT10_PONAB - 28S ribosomal protein S10, mitochondrial OS=Pongo abelii GN=MRPS10 PE=2 SV=1	4.0E-67	[1..201]	[1..201]
gi\|109071160, gi... - gi\|109102968\|ref\|XP_001114991.1\| PREDICTED: similar to mitochondrial ribosomal protein S10 [Macaca m... gi\|90075826 - gi\|90075826\|dbj\|BAE87593.1\| unnamed protein product [Macaca fascicularis]	2.0E-65	[1..201]	[1..201]
gi\|55626620 - gi\|55626620\|ref\|XP_518474.1\| PREDICTED: mitochondrial ribosomal protein S10 isoform 2 [Pan troglodyt...	2.0E-65	[1..201]	[1..201]
RT10_BOVIN - 28S ribosomal protein S10, mitochondrial OS=Bos taurus GN=MRPS10 PE=1 SV=2	8.0E-56	[1..201]	[1..201]
gi\|73972938 - gi\|73972938\|ref\|XP_532137.2\| PREDICTED: similar to mitochondrial ribosomal protein S10 [Canis famili...	2.0E-55	[1..201]	[1..201]
gi\|63146275 - gi\|63146275\|gb\|AAH96043.1\| Mrps10 protein [Mus musculus]	4.0E-48	[12..201]	[4..192]

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Predicted Domain #1

Region A:
Residues: [1-201]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MAARTAFGAV CRRLWQGLGN FSVNTSKGNT AKNGGLLLST NMKWVQFSNL HVDVPKDLTK  60
   61 PVVTISDEPD ILYKRLSVLV KGHDKAVLDS YEYFAVLAAK ELGISIKVHE PPRKIERFTL 120
  121 LQSVHIYKKH RVQYEMRTLY RCLELEHLTG STADVYLEYI QRNLPEGVAM EVTKTQLEQL 180
  181 PEHIKEPIWE TLSEEKEESK S

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	32.39794
Match:	1p6gJ
Description:	70S ribosome functional complex
Matching Structure (courtesy of the PDB):

Predicted functions:

Term	Confidence	Notes
structural constituent of ribosome	6.55086108719957	bayes_pls_golite062009
structural molecule activity	6.25471072470612	bayes_pls_golite062009
binding	0.00953151872179048	bayes_pls_golite062009

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits

Predicted functions: