| Protein: | MATR3 |
| Organism: | Homo sapiens |
| Length: | 847 amino acids |
| Reference: | Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16 |
Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for MATR3.
| Description | E-value | Query Range |
Subject Range |
|
|
0.0 | [1..847] | [1..847] |
|
|
0.0 | [1..847] | [7..853] |
|
|
0.0 | [1..847] | [1..845] |
|
|
0.0 | [1..847] | [1..847] |
|
|
0.0 | [1..847] | [1..847] |
|
|
0.0 | [1..847] | [1..846] |
|
Region A: Residues: [1-95] |
1 11 21 31 41 51
| | | | | |
1 MSKSFQQSSL SRDSQGHGRD LSAAGIGLLA AATQSLSMPA SLGRMNQGTA RLASLMNLGM 60
61 SSSLNQQGAH SALSSASTSS HNLQSIFNIG SRGPL
|
| Detection Method: |  |
Shown below is our most confident de novo (Rosetta) prediction for this domain.
Click here to view all matches.
Found no confident structure predictions for this domain.
|
Region A: Residues: [96-167] |
1 11 21 31 41 51
| | | | | |
1 PLSSQHRGDA DQASNILASF GLSARDLDEL SRYPEDKITP ENLPQILLQL KRRRTEEGPT 60
61 LSYGRDGRSA TR
|
| Detection Method: | |
Shown below is our most confident prediction for this domain.
Click here to view all matches.
Found no confident structure predictions for this domain.
|
Region A: Residues: [168-375] |
1 11 21 31 41 51
| | | | | |
1 EPPYRVPRDD WEEKRHFRRD SFDDRGPSLN PVLDYDHGSR SQESGYYDRM DYEDDRLRDG 60
61 ERCRDDSFFG ETSHNYHKFD SEYERMGRGP GPLQERSLFE KKRGAPPSSN IEDFHGLLPK 120
121 GYPHLCSICD LPVHSNKEWS QHINGASHSR RCQLLLEIYP EWNPDNDTGH TMGDPFMLQQ 180
181 STNPAPGILG PPPPSFHLGG PAVGPRGN
|
| Detection Method: | |
Shown below is our most confident de novo (Rosetta) prediction for this domain.
Click here to view all matches.
Found no confident structure predictions for this domain.
|
Region A: Residues: [376-472] |
1 11 21 31 41 51
| | | | | |
1 LGAGNGNLQG PRHMQKGRVE TSRVVHIMDF QRGKNLRYQL LQLVEPFGVI SNHLILNKIN 60
61 EAFIEMATTE DAQAAVDYYT TTPALVFGKP VRVHLSQ
|
| Detection Method: | |
| Confidence: | 11.0 |
| Match: | 1x4fA |
| Description: | Solution structure of the second RRM domain in Matrin 3 |
Matching Structure (courtesy of the PDB): |
|
| Term | Confidence | Notes |
| binding | 2.26550630643712 | bayes_pls_golite062009 |
| nucleic acid binding | 2.02897811404491 | bayes_pls_golite062009 |
| RNA binding | 1.45577328897026 | bayes_pls_golite062009 |
| mRNA binding | 0.274978159646657 | bayes_pls_golite062009 |
|
Region A: Residues: [473-596] |
1 11 21 31 41 51
| | | | | |
1 KYKRIKKPEG KPDQKFDQKQ ELGRVIHLSN LPHSGYSDSA VLKLAEPYGK IKNYILMRMK 60
61 SQAFIEMETR EDAMAMVDHC LKKALWFQGR CVKVDLSEKY KKLVLRIPNR GIDLLKKDKS 120
121 RKRS
|
| Detection Method: | |
| Confidence: | 4.23 |
| Match: | 1x4fA |
| Description: | Solution structure of the second RRM domain in Matrin 3 |
| Matching Structure (courtesy of the PDB): |
|
| Term | Confidence | Notes |
| binding | 2.10183662096756 | bayes_pls_golite062009 |
| nucleic acid binding | 1.76030419422519 | bayes_pls_golite062009 |
| RNA binding | 1.04699342909932 | bayes_pls_golite062009 |
|
Region A: Residues: [597-661] |
1 11 21 31 41 51
| | | | | |
1 YSPDGKESPS DKKSKTDGSQ KTESSTEGKE QEEKSGEDGE KDTKDDQTEQ EPNMLLESED 60
61 ELLVD
|
| Detection Method: | |
Shown below is our most confident de novo (Rosetta) prediction for this domain.
Click here to view all matches.
Found no confident structure predictions for this domain.
|
Region A: Residues: [662-847] |
1 11 21 31 41 51
| | | | | |
1 EEEAAALLES GSSVGDETDL ANLGDVASDG KKEPSDKAVK KDGSASAAAK KKLKKVDKIE 60
61 ELDQENEAAL ENGIKNEENT EPGAESSENA DDPNKDTSEN ADGQSDENKD DYTIPDEYRI 120
121 GPYQPNVPVG IDYVIPKTGF YCKLCSLFYT NEEVAKNTHC SSLPHYQKLK KFLNKLAEER 180
181 RQKKET
|
| Detection Method: | |
Shown below is our most confident prediction for this domain.
Click here to view all matches.
Found no confident structure predictions for this domain.
