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View Structure Prediction Details

Protein: HIST1H2BK
Organism: Homo sapiens
Length: 126 amino acids
Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16



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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for HIST1H2BK.

Description E-value Query
Range		 Subject
Range
gi|50728600 - gi|50728600|ref|XP_416197.1| PREDICTED: similar to H2B histone family, member F [Gallus gallus]
 5.0E-55 [1..126] [70..195]
gi|76658744 - gi|76658744|ref|XP_598732.2| PREDICTED: similar to Histone H2B 291B [Bos taurus]
 7.0E-55 [1..126] [107..232]
gi|149029297, gi... - gi|62663602|ref|XP_214483.3| PREDICTED: similar to Histone H2B 291B [Rattus norvegicus], gi|14902929...
 1.0E-53 [1..126] [1..126]
gi|109016350 - gi|109016350|ref|XP_001104697.1| PREDICTED: similar to Histone H2B 291B [Macaca mulatta]
 2.0E-53 [1..126] [66..191]
gi|74012717 - gi|74012717|ref|XP_545431.2| PREDICTED: similar to Histone H2B 291B, partial [Canis familiaris]
 2.0E-53 [1..121] [1..121]

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Predicted Domain #1
Region A:
Residues: [1-126] 
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MPEPAKSAPA PKKGSKKAVT KAQKKDGKKR KRSRKESYSV YVYKVLKQVH PDTGISSKAM  60
   61 GIMNSFVNDI FERIAGEASR LAHYNKRSTI TSREIQTAVR LLLPGELAKH AVSEGTKAVT 120
  121 KYTSAK

[Run NCBI BLAST on this sequence.]

Detection Method: PSI-BLAST
Confidence: 49.30103
Match: 2cv5D
Description: Crystal structure of human nucleosome core particle
Matching Structure (courtesy of the PDB):

Predicted functions:

Term Confidence Notes
binding 0.581886805340955 bayes_pls_golite062009
YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle