YRC Logo
PROTEIN SEARCH:
Descriptions Names[Advanced Search]

View Structure Prediction Details

Protein: CE40375
Organism: Caenorhabditis elegans
Length: 147 amino acids
Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16



[What does the above image mean?]


[Show Ginzu Version Information]


Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for CE40375.

Description E-value Query
Range
Subject
Range
gi|61369643, gi|... - gi|61369656|gb|AAX43367.1| RAB interacting factor [synthetic construct], gi|61369649|gb|AAX43366.1| ...
201.0 [0..13] [134..1]

Back

Predicted Domain #1
Region A:
Residues: [1-147]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSSSTNSQPS ALMQPSKSPT ESRSSVVKVE TNESTYICKI CQTVVILKNM TTEYLDEERD  60
   61 LPLPRQKKGI DHTQTEPIRG FFGVKDMFAF ENVGFTRSSE GKRYLVCGEC EQGPVGFVDP 120
  121 VTEMNYVSPE RLDVLPDVAA AAVEAGK

[Run NCBI BLAST on this sequence.]

Detection Method: PSI-BLAST
Confidence: 51.39794
Match: 1fwqA
Description: RabGEF Mss4
Matching Structure (courtesy of the PDB):

Predicted functions:

Term Confidence Notes
binding 0.727640253017061 bayes_pls_golite062009

YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle