YRC Public Data Repository - Protein Structure Prediction

Protein:	gi\|5730079, gi\|1...
Organism:	Homo sapiens
Length:	183 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|5730079, gi|1....

Description	E-value	Query Range	Subject Range
gi\|13560783 - gi\|13560783\|gb\|AAK30205.1\|AF349964_1 poly(A)-binding protein [Daucus carota]	139.0	[0..2]	[160..211]
gi\|76633747 - gi\|76633747\|ref\|XP_881817.1\| PREDICTED: similar to Polyadenylate-binding protein 1 (Poly(A)-binding ...	138.0	[0..10]	[159..191]
gi\|73974132 - gi\|73974132\|ref\|XP_856753.1\| PREDICTED: similar to Polyadenylate-binding protein 1 (Poly(A)-binding ...	138.0	[0..10]	[159..191]
PABP_MAGGR - Polyadenylate-binding protein, cytoplasmic and nuclear OS=Magnaporthe grisea GN=PAB1 PE=3 SV=1 PABP_MAGO7 - Polyadenylate-binding protein, cytoplasmic and nuclear OS=Magnaporthe oryzae (strain 70-15 / ATCC MY...	138.0	[0..10]	[148..242]
gi\|47217896 - gi\|47217896\|emb\|CAG05018.1\| unnamed protein product [Tetraodon nigroviridis]	137.0	[0..10]	[159..178]
gi\|1082703, gi\|6... - gi\|693937\|emb\|CAA88401.1\| polyadenylate binding protein II [Homo sapiens], pir\|\|S52491 polyadenylate...	137.0	[0..10]	[159..166]

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Predicted Domain #1

Region A:
Residues: [1-183]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSRYLRPPNT SLFVRNVADD TRSEDLRREF GRYGPIVDVY VPLDFYTRRP RGFAYVQFED  60
   61 VRDAEDALHN LDRKWICGRQ IEIQFAQGDR KTPNQMKAKE GRNVYSSSRY DDYDRYRRSR 120
  121 SRSYERRRSR SRSFDYNYRR SYSPRNSRPT GRPRRSRSHS DNDRPNCSWN TQYSSAYYTS 180
  181 RKI

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	29.39794
Match:	1ha1A
Description:	HNRNP A1 (RBD1,2) FROM HOMO SAPIENS
Matching Structure (courtesy of the PDB):

Predicted functions:

Term	Confidence	Notes
binding	0.950788308762215	bayes_pls_golite062009
nucleic acid binding	0.29562225149076	bayes_pls_golite062009

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits

Predicted functions: