YRC Public Data Repository - Protein Structure Prediction

Protein:	SSBP1
Organism:	Homo sapiens
Length:	148 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for SSBP1.

Description	E-value	Query Range	Subject Range
gi\|88818879, gi\|... - gi\|88858653\|ref\|ZP_01133294.1\| Single-strand binding protein (SSB) (Helix-destabilizing protein) [Ps...	2.0E-42	[26..148]	[1..121]
gi\|83648823, gi\|... - gi\|83648823\|ref\|YP_437258.1\| single-stranded DNA-binding protein [Hahella chejuensis KCTC 2396], gi\|...	5.0E-42	[26..146]	[1..118]
gi\|194684063, gi... - gi\|197286576\|ref\|YP_002152448.1\| single-strand binding protein [Proteus mirabilis HI4320], gi\|194684... SSB_PROMI - Single-stranded DNA-binding protein OS=Proteus mirabilis GN=ssb PE=1 SV=2	8.0E-42	[25..147]	[1..120]
gi\|109068491, gi... - gi\|109068499\|ref\|XP_001084536.1\| PREDICTED: single-stranded DNA binding protein 1 isoform 5 [Macaca ...	2.0E-41	[1..148]	[1..148]
gi\|117626340, gi... - gi\|117626340\|ref\|YP_859663.1\| single strand DNA-binding protein [Escherichia coli APEC O1], gi\|11551...	2.0E-41	[9..146]	[6..138]
gi\|226901544, gi... - gi\|237703632\|ref\|ZP_04534113.1\| single strand DNA-binding protein [Escherichia sp. 3_2_53FAA], gi\|22... gi\|226840164, gi... - gi\|254037058\|ref\|ZP_04871135.1\| single strand DNA-binding protein [Escherichia sp. 1_1_43], gi\|22684... gi\|24054654, gi\|... - ref\|NP_709860.1\| ssDNA-binding protein [Shigella flexneri 2a str. 301], gb\|AAN45567.1\| ssDNA-bindin... gi\|91075172, gi\|... - gi\|91213598\|ref\|YP_543584.1\| single strand DNA-binding protein [Escherichia coli UTI89], gi\|91075172...	2.0E-41	[9..146]	[8..140]
SO4028 - single-strand binding protein SSB_SHEON - Single-stranded DNA-binding protein OS=Shewanella oneidensis (strain MR-1) GN=ssb PE=3 SV=1	3.0E-41	[25..148]	[1..120]
SSBP_PONAB - Single-stranded DNA-binding protein, mitochondrial OS=Pongo abelii GN=SSBP1 PE=2 SV=1 gi\|55726689 - gi\|55726689\|emb\|CAH90107.1\| hypothetical protein [Pongo abelii]	3.0E-41	[1..148]	[1..148]
gi\|311086266\|gb\|... - single-strand binding protein [Buchnera aphidicola str. LL01 (Acyrthosiphon pisum)] gi\|311087920\|gb\|... - single-strand binding protein [Buchnera aphidicola str. JF98 (Acyrthosiphon pisum)] SSB_BUCAI - Single-stranded DNA-binding protein OS=Buchnera aphidicola subsp. Acyrthosiphon pisum GN=ssb PE=3 SV... gi\|311087430\|gb\|... - single-strand binding protein [Buchnera aphidicola str. JF99 (Acyrthosiphon pisum)] SSB_BUCAI - Single-stranded DNA-binding protein OS=Buchnera aphidicola subsp. Acyrthosiphon pisum (strain APS) G... gi\|219682445, gi... - gi\|219682445\|ref\|YP_002468829.1\| single-strand binding protein [Buchnera aphidicola str. Tuc7 (Acyrt... gi\|257471595\|ref... - single-strand binding protein [Buchnera aphidicola str. LSR1 (Acyrthosiphon pisum)] gi\|25294289 - gi\|25294289\|pir\|\|E84993 single-strand binding protein [imported] - Buchnera sp. (strain APS) gi\|311086841\|gb\|... - single-strand binding protein [Buchnera aphidicola str. TLW03 (Acyrthosiphon pisum)] gi\|219681890, gi... - gi\|219681890\|ref\|YP_002468276.1\| single-strand binding protein [Buchnera aphidicola str. 5A (Acyrtho...	3.0E-41	[25..146]	[1..119]
gi\|30410826 - gi\|30410826\|ref\|NP_660857.2\| single-strand binding protein [Buchnera aphidicola str. Sg (Schizaphis ...	6.0E-41	[24..147]	[14..134]

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Predicted Domain #1

Region A:
Residues: [1-148]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MFRRPVLQVL RQFVRHESET TTSLVLERSL NRVHLLGRVG QDPVLRQVEG KNPVTIFSLA  60
   61 TNEMWRSGDS EVYQLGDVSQ KTTWHRISVF RPGLRDVAYQ YVKKGSRIYL EGKIDYGEYM 120
  121 DKNNVRRQAT TIIADNIIFL SDQTKEKE

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	35.30103
Match:	2dudA
Description:	No description for 2dudA was found.

Predicted functions:

Term	Confidence	Notes
binding	2.25744085310968	bayes_pls_golite062009
single-stranded DNA binding	1.15763214784741	bayes_pls_golite062009
structure-specific DNA binding	1.14096529528425	bayes_pls_golite062009
nucleic acid binding	1.13555360546437	bayes_pls_golite062009
DNA binding	0.977073350591062	bayes_pls_golite062009
protein binding	0.175576548546361	bayes_pls_golite062009

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits

Predicted functions: