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View Structure Prediction Details

Protein: gi|20809545, gi|...
Organism: Homo sapiens
Length: 425 amino acids
Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16



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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|20809545, gi|....

Description E-value Query
Range		 Subject
Range
gi|13560783 - gi|13560783|gb|AAK30205.1|AF349964_1 poly(A)-binding protein [Daucus carota]
 3.0E-52 [81..420] [39..363]
PABP2_ARATH - Polyadenylate-binding protein 2 OS=Arabidopsis thaliana GN=PAB2 PE=1 SV=1
 3.0E-51 [82..417] [36..358]
gi|76633747 - gi|76633747|ref|XP_881817.1| PREDICTED: similar to Polyadenylate-binding protein 1 (Poly(A)-binding ...
 1.0E-50 [63..383] [80..394]
gi|159130644 - gi|159130644|gb|EDP55757.1| polyadenylate-binding protein [Aspergillus fumigatus A1163]
PABP_ASPFU - Polyadenylate-binding protein, cytoplasmic and nuclear OS=Aspergillus fumigatus GN=pab1 PE=3 SV=1
PABP_ASPFU - Polyadenylate-binding protein, cytoplasmic and nuclear OS=Neosartorya fumigata (strain ATCC MYA-4609...
 1.0E-50 [46..416] [16..375]
gi|56758360 - gi|56758360|gb|AAW27320.1| SJCHGC06322 protein [Schistosoma japonicum]
 7.0E-50 [82..420] [13..337]
gi|92873940 - gi|92873940|gb|ABE82276.1| RNA-binding region RNP-1 (RNA recognition motif) [Medicago truncatula]
 1.0E-49 [81..420] [33..357]

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Predicted Domain #1
Region A:
Residues: [1-425] 
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSKRKRKRSV QEGENPDDGV RGSPPEDYRL GQVASSLFRG EHHSRGGTGR LASLFSSLEP  60
   61 QIQPVYVPVP KQTIKKTKRN EEEESTSQIE RPLSQEPAKK VKAKKKHTNA EKKLADRESA 120
  121 LASADLEEEI HQKQGQKRKN SQPGVKVADR KILDDTEDTV VSQRKKIQIN QEEERLKNER 180
  181 TVFVGNLPVT CNKKKLKSFF KEYGQIESVR FRSLIPAEGT LSKKLAAIKR KIHPDQKNIN 240
  241 AYVVFKEESA ATQALKRNGA QIADGFRIRV DLASETSSRD KRSVFVGNLP YKVEESAIEK 300
  301 HFLDCGSIMA VRIVRDKMTG IGKGFGYVLF ENTDSVHLAL KLNNSELMGR KLRVMRSVNK 360
  361 EKFKQQNSNP RLKNVSKPKQ GLNFTSKTAE GHPKSLFIGE KAVLLKTKKK GQKKSGRPKK 420
  421 QRKQK

[Run NCBI BLAST on this sequence.]

Detection Method: PSI-BLAST
Confidence: 18.045757
Match: 2ghpA
Description: No description for 2ghpA was found.

Predicted functions:

Term Confidence Notes
binding 0.950788308762215 bayes_pls_golite062009
nucleic acid binding 0.29562225149076 bayes_pls_golite062009
YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle