Protein: | XPA |
Organism: | Homo sapiens |
Length: | 273 amino acids |
Reference: | Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16 |
Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for XPA.
Description | E-value | Query Range |
Subject Range |
|
1.0E-95 | [1..273] | [1..273] |
|
9.0E-95 | [1..273] | [1..273] |
|
2.0E-94 | [1..273] | [1..273] |
|
6.0E-92 | [1..273] | [1..273] |
|
2.0E-91 | [1..273] | [1..273] |
|
1.0E-89 | [2..273] | [4..272] |
Region A: Residues: [1-62] |
1 11 21 31 41 51 | | | | | | 1 MAAADGALPE AAALEQPAEL PASVRASIER KRQRALMLRQ ARLAARPYSA TAAAATGGMA 60 61 NV |
Shown below are all of our structure predictions for this domain.
Click here to view only most confident match.
Found no structure predictions for this domain.
Region A: Residues: [63-273] |
1 11 21 31 41 51 | | | | | | 1 KAAPKIIDTG GGFILEEEEE EEQKIGKVVH QPGPVMEFDY VICEECGKEF MDSYLMNHFD 60 61 LPTCDNCRDA DDKHKLITKT EAKQEYLLKD CDLEKREPPL KFIVKKNPHH SQWGDMKLYL 120 121 KLQIVKRSLE VWGSQEALEE AKEVRQENRE KMKQKKFDKK VKELRRAVRS SVWKRETIVH 180 181 QHEYGPEENL EDDMYRKTCT MCGHELTYEK M |
Detection Method: | |
Confidence: | 45.522879 |
Match: | 1xpaA |
Description: | SOLUTION STRUCTURE OF THE DNA-AND RPA-BINDING DOMAIN OF THE HUMAN REPAIR FACTOR XPA, NMR, 1 STRUCTURE |
Matching Structure (courtesy of the PDB): |
Term | Confidence | Notes |
binding | 2.3712591616364 | bayes_pls_golite062009 |
transcription regulator activity | 2.20400142735918 | bayes_pls_golite062009 |
DNA binding | 2.18702281581791 | bayes_pls_golite062009 |
nucleic acid binding | 2.04270847321412 | bayes_pls_golite062009 |
transcription factor activity | 1.44182975349714 | bayes_pls_golite062009 |
protein binding | 1.14219782236887 | bayes_pls_golite062009 |
sequence-specific DNA binding | 0.71242082351425 | bayes_pls_golite062009 |
transcription activator activity | 0.612819891085 | bayes_pls_golite062009 |
structure-specific DNA binding | 0.610805977602876 | bayes_pls_golite062009 |
RNA polymerase II transcription factor activity | 0.51536225088963 | bayes_pls_golite062009 |
ligand-dependent nuclear receptor activity | 0.44426709732278 | bayes_pls_golite062009 |
transcription factor binding | 0.40850395411512 | bayes_pls_golite062009 |
general RNA polymerase II transcription factor activity | 0.37925266318051 | bayes_pls_golite062009 |
double-stranded DNA binding | 0.280685154942276 | bayes_pls_golite062009 |
catalytic activity | 0.101795606736461 | bayes_pls_golite062009 |