Protein: | LEMD3 |
Organism: | Homo sapiens |
Length: | 911 amino acids |
Reference: | Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16 |
Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for LEMD3.
Description | E-value | Query Range |
Subject Range |
|
0.0 | [9..911] | [9..909] |
|
0.0 | [9..911] | [9..911] |
|
0.0 | [9..911] | [9..910] |
|
0.0 | [9..911] | [9..913] |
|
0.0 | [9..911] | [12..915] |
|
0.0 | [9..911] | [10..919] |
|
0.0 | [234..911] | [50..721] |
|
0.0 | [8..910] | [2..780] |
Region A: Residues: [1-430] |
1 11 21 31 41 51 | | | | | | 1 MAAAAASAPQ QLSDEELFSQ LRRYGLSPGP VTESTRPVYL KKLKKLREEE QQQHRSGGRG 60 61 NKTRNSNNNN TAAATVAAAG PAAAAAAGMG VRPVSGDLSY LRTPGGLCRI SASGPESLLG 120 121 GPGGASAAPA AGSKVLLGFS SDESDVEASP RDQAGGGGRK DRASLQYRGL KAPPAPLAAS 180 181 EVTNSNSAER RKPHSWWGAR RPAGPELQTP PGKDGAVEDE EGEGEDGEER DPETEEPLWA 240 241 SRTVNGSRLV PYSCRENYSD SEEEDDDDVA SSRQVLKDDS LSRHRPRRTH SKPLPPLTAK 300 301 SAGGRLETSV QGGGGLAMND RAAAAGSLDR SRNLEEAAAA EQGGGCDQVD SSPVPRYRVN 360 361 AKKLTPLLPP PLTDMDSTLD SSTGSLLKTN NHIGGGAFSV DSPRIYSNSL PPSAAVAASS 420 421 SLRINHANHT |
Detection Method: | |
Confidence: | 17.0 |
Match: | 1y0fB |
Description: | No description for 1y0fB was found. |
Region A: Residues: [431-642] |
1 11 21 31 41 51 | | | | | | 1 GSNHTYLKNT YNKPKLSEPE EELLQQFKRE EVSPTGSFSA HYLSMFLLTA ACLFFLILGL 60 61 TYLGMRGTGV SEDGELSIEN PFGETFGKIQ ESEKTLMMNT LYKLHDRLAQ LAGDHECGSS 120 121 SQRTLSVQEA AAYLKDLGPE YEGIFNTSLQ WILENGKDVG IRCVGFGPEE ELTNITDVQF 180 181 LQSTRPLMSF WCRFRRAFVT VTHRLLLLCL GV |
Shown below are all of our de novo (Rosetta) predictions for this domain.
Click here to view only most confident match.
Found no structure predictions for this domain.
Region A: Residues: [643-771] |
1 11 21 31 41 51 | | | | | | 1 VMVCVVLRYM KYRWTKEEEE TRQMYDMVVK IIDVLRSHNE ACQENKDLQP YMPIPHVRDS 60 61 LIQPHDRKKM KKVWDRAVDF LAANESRVRT ETRRIGGADF LVWRWIQPSA SCDKILVIPS 120 121 KVWQGQAFH |
Detection Method: | |
Confidence: | 30.0 |
Match: | 2ch0A |
Description: | No description for 2ch0A was found. |
Region A: Residues: [772-911] |
1 11 21 31 41 51 | | | | | | 1 LDRRNSPPNS LTPCLKIRNM FDPVMEIGDQ WHLAIQEAIL EKCSDNDGIV HIAVDKNSRE 60 61 GCVYVKCLSP EYAGKAFKAL HGSWFDGKLV TVKYLRLDRY HHRFPQALTS NTPLKPSNKH 120 121 MNSMSHLRLR TGLTNSQGSS |
Detection Method: | |
Confidence: | 16.0 |
Match: | 1fnxH |
Description: | Hu antigen C (Huc) |
Matching Structure (courtesy of the PDB): |
Term | Confidence | Notes |
binding | 2.29041217255208 | bayes_pls_golite062009 |
nucleic acid binding | 1.91189490017911 | bayes_pls_golite062009 |
RNA binding | 1.38087228196877 | bayes_pls_golite062009 |
mRNA binding | 0.27767437285052 | bayes_pls_golite062009 |
protein binding | 0.0101134374085809 | bayes_pls_golite062009 |