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View Structure Prediction Details

Protein: C20orf4
Organism: Homo sapiens
Length: 384 amino acids
Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16



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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for C20orf4.

Description E-value Query
Range
Subject
Range
gi|114681744, gi... - gi|114681744|ref|XP_001166196.1| PREDICTED: similar to C20orf4 isoform 4 [Pan troglodytes], gi|11468...
0.0 [1..384] [1..384]
gi|4680685 - gi|4680685|gb|AAD27732.1|AF132957_1 CGI-23 protein [Homo sapiens]
0.0 [1..384] [1..384]
AAR2_PONAB - Protein AAR2 homolog OS=Pongo abelii GN=AAR2 PE=2 SV=1
CT004_PONPY - Uncharacterized protein C20orf4 homolog - Pongo pygmaeus (Orangutan)
0.0 [1..384] [1..384]
AAR2_MACFA - Protein AAR2 homolog OS=Macaca fascicularis GN=AAR2 PE=2 SV=1
0.0 [1..384] [1..384]
gi|57104192 - gi|57104192|ref|XP_534409.1| PREDICTED: similar to Protein C20orf4 homolog [Canis familiaris]
0.0 [1..384] [1..384]
CT04_MOUSE, CT00... - (Q9D2V5) Protein c20orf4 homolog, Uncharacterized protein C20orf4 homolog OS=Mus musculus PE=2 SV=2
0.0 [1..384] [1..384]
AAR2_BOVIN - Protein AAR2 homolog OS=Bos taurus GN=AAR2 PE=2 SV=1
0.0 [1..384] [1..384]

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Predicted Domain #1
Region A:
Residues: [1-157]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MAAVQMDPEL AKRLFFEGAT VVILNMPKGT EFGIDYNSWE VGPKFRGVKM IPPGIHFLHY  60
   61 SSVDKANPKE VGPRMGFFLS LHQRGLTVLR WSTLREEVDL SPAPESEVEA MRANLQELDQ 120
  121 FLGPYPYATL KKWISLTNFI SEATVEKLQP ENRQICA

[Run NCBI BLAST on this sequence.]

Detection Method: MSA

Shown below is our most confident prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

Predicted Domain #2
Region A:
Residues: [158-238]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 FSDVLPVLSM KHTKDRVGQN LPRCGIECKS YQEGLARLPE MKPRAGTEIR FSELPTQMFP  60
   61 EGATPAEITK HSMDLSYALE T

[Run NCBI BLAST on this sequence.]

Detection Method: deduced

Shown below is our most confident de novo (Rosetta) prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

Predicted Domain #3
Region A:
Residues: [239-384]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 VLNKQFPSSP QDVLGELQFA FVCFLLGNVY EAFEHWKRLL NLLCRSEAAM MKHHTLYINL  60
   61 ISILYHQLGE IPADFFVDIV SQDNFLTSTL QVFFSSACSI AVDATLRKKA EKFQAHLTKK 120
  121 FRWDFAAEPE DCAPVVVELP EGIEMG

[Run NCBI BLAST on this sequence.]

Detection Method: MSA

Shown below is our most confident prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.


YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle