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View Structure Prediction Details

Protein: C20orf4
Organism: Homo sapiens
Length: 384 amino acids
Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16



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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for C20orf4.

Description E-value Query
Range
Subject
Range
gi|114681744, gi... - gi|114681744|ref|XP_001166196.1| PREDICTED: similar to C20orf4 isoform 4 [Pan troglodytes], gi|11468...
0.0 [1..384] [1..384]
gi|4680685 - gi|4680685|gb|AAD27732.1|AF132957_1 CGI-23 protein [Homo sapiens]
0.0 [1..384] [1..384]
AAR2_PONAB - Protein AAR2 homolog OS=Pongo abelii GN=AAR2 PE=2 SV=1
CT004_PONPY - Uncharacterized protein C20orf4 homolog - Pongo pygmaeus (Orangutan)
0.0 [1..384] [1..384]
AAR2_MACFA - Protein AAR2 homolog OS=Macaca fascicularis GN=AAR2 PE=2 SV=1
0.0 [1..384] [1..384]
gi|57104192 - gi|57104192|ref|XP_534409.1| PREDICTED: similar to Protein C20orf4 homolog [Canis familiaris]
0.0 [1..384] [1..384]
CT04_MOUSE, CT00... - (Q9D2V5) Protein c20orf4 homolog, Uncharacterized protein C20orf4 homolog OS=Mus musculus PE=2 SV=2
0.0 [1..384] [1..384]
AAR2_BOVIN - Protein AAR2 homolog OS=Bos taurus GN=AAR2 PE=2 SV=1
0.0 [1..384] [1..384]

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Predicted Domain #1
Region A:
Residues: [1-157]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MAAVQMDPEL AKRLFFEGAT VVILNMPKGT EFGIDYNSWE VGPKFRGVKM IPPGIHFLHY  60
   61 SSVDKANPKE VGPRMGFFLS LHQRGLTVLR WSTLREEVDL SPAPESEVEA MRANLQELDQ 120
  121 FLGPYPYATL KKWISLTNFI SEATVEKLQP ENRQICA

[Run NCBI BLAST on this sequence.]

Detection Method: MSA

Shown below are all of our structure predictions for this domain.
Click here to view only most confident match.

Found no structure predictions for this domain.

Predicted Domain #2
Region A:
Residues: [158-238]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 FSDVLPVLSM KHTKDRVGQN LPRCGIECKS YQEGLARLPE MKPRAGTEIR FSELPTQMFP  60
   61 EGATPAEITK HSMDLSYALE T

[Run NCBI BLAST on this sequence.]

Detection Method: deduced

Shown below are all of our de novo (Rosetta) predictions for this domain.
Click here to view only most confident match.

Found no structure predictions for this domain.

Predicted Domain #3
Region A:
Residues: [239-384]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 VLNKQFPSSP QDVLGELQFA FVCFLLGNVY EAFEHWKRLL NLLCRSEAAM MKHHTLYINL  60
   61 ISILYHQLGE IPADFFVDIV SQDNFLTSTL QVFFSSACSI AVDATLRKKA EKFQAHLTKK 120
  121 FRWDFAAEPE DCAPVVVELP EGIEMG

[Run NCBI BLAST on this sequence.]

Detection Method: MSA

Shown below are all of our structure predictions for this domain.
Click here to view only most confident match.

Found no structure predictions for this domain.


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Created and Maintained by: Michael Riffle