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View Structure Prediction Details

Protein: RANBP9
Organism: Homo sapiens
Length: 729 amino acids
Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16



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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for RANBP9.

Description E-value Query
Range
Subject
Range
gi|74004091 - gi|74004091|ref|XP_535893.2| PREDICTED: similar to RAN binding protein 9 [Canis familiaris]
0.0 [149..729] [133..712]
RANB9_MOUSE - Ran-binding protein 9 OS=Mus musculus GN=Ranbp9 PE=1 SV=1
0.0 [111..729] [36..653]
gi|114605891 - gi|114605891|ref|XP_518246.2| PREDICTED: RAN binding protein 9 [Pan troglodytes]
0.0 [99..729] [412..1042]
gi|31127073 - gi|31127073|gb|AAH52781.1| RANBP9 protein [Homo sapiens]
0.0 [126..729] [199..802]
RANB9_XENLA - Ran-binding protein 9 OS=Xenopus laevis GN=ranbp9 PE=2 SV=1
0.0 [162..729] [17..548]
RANB9_XENTR - Ran-binding protein 9 OS=Xenopus tropicalis GN=ranbp9 PE=2 SV=1
0.0 [162..729] [17..548]

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Predicted Domain #1
Region A:
Residues: [1-136]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSGQPPPPPP QQQQQQQQLS PPPPAALAPV SGVVLPAPPA VSAGSSPAGS PGGGAGGEGL  60
   61 GAAAAALLLH PPPPPPPATA APPPPPPPPP PPASAAAPAS GPPAPPGLAA GPGPAGGAPT 120
  121 PALVAGSSAA APFPHG

[Run NCBI BLAST on this sequence.]

Detection Method: PSI-BLAST
Confidence: 6.69897
Match: 1y0fB
Description: No description for 1y0fB was found.

Predicted Domain #2
Region A:
Residues: [137-363]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 DSALNEQEKE LQRRLKRLYP AVDEQETPLP RSWSPKDKFS YIGLSQNNLR VHYKGHGKTP  60
   61 KDAASVRATH PIPAACGIYY FEVKIVSKGR DGYMGIGLSA QGVNMNRLPG WDKHSYGYHG 120
  121 DDGHSFCSSG TGQPYGPTFT TGDVIGCCVN LINNTCFYTK NGHSLGIAFT DLPPNLYPTV 180
  181 GLQTPGEVVD ANFGQHPFVF DIEDYMREWR TKIQAQIDRF PIGDREG

[Run NCBI BLAST on this sequence.]

Detection Method: PSI-BLAST
Confidence: 26.09691
Match: 2fnjA
Description: No description for 2fnjA was found.

Predicted functions:

Term Confidence Notes
binding 2.25309005274324 bayes_pls_golite062009
cytoskeletal protein binding 2.16616430987996 bayes_pls_golite062009
actin binding 1.52354782116386 bayes_pls_golite062009
protein binding 0.964880666937228 bayes_pls_golite062009
structural constituent of cytoskeleton 0.160855218996334 bayes_pls_golite062009

Predicted Domain #3
Region A:
Residues: [364-571]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 EWQTMIQKMV SSYLVHHGYC ATAEAFARST DQTVLEELAS IKNRQRIQKL VLAGRMGEAI  60
   61 ETTQQLYPSL LERNPNLLFT LKVRQFIEMV NGTDSEVRCL GGRSPKSQDS YPVSPRPFSS 120
  121 PSMSPSHGMN IHNLASGKGS TAHFSGFESC SNGVISNKAH QSYCHSNKHQ SSNLNVPELN 180
  181 SINMSRSQQV NNFTSNDVDM ETDHYSNG

[Run NCBI BLAST on this sequence.]

Detection Method: MSA

Shown below are all of our structure predictions for this domain.
Click here to view only most confident match.

Found no structure predictions for this domain.

Predicted Domain #4
Region A:
Residues: [572-729]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 VGETSSNGFL NGSSKHDHEM EDCDTEMEVD SSQLRRQLCG GSQAAIERMI HFGRELQAMS  60
   61 EQLRRDCGKN TANKKMLKDA FSLLAYSDPW NSPVGNQLDP IQREPVCSAL NSAILETHNL 120
  121 PKQPPLALAM GQATQCLGLM ARSGIGSCAF ATVEDYLH

[Run NCBI BLAST on this sequence.]

Detection Method: MSA

Shown below are all of our structure predictions for this domain.
Click here to view only most confident match.

Found no structure predictions for this domain.


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Created and Maintained by: Michael Riffle