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View Structure Prediction Details

Protein: gi|119585133, gi...
Organism: Homo sapiens
Length: 299 amino acids
Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16



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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|119585133, gi....

Description E-value Query
Range
Subject
Range
gi|62184145, gi|... - gi|84781731|ref|NP_001034103.1| zinc finger, DHHC-type containing 3 [Rattus norvegicus], gi|62184145...
1.0E-77 [1..299] [1..299]
gi|57101288 - gi|57101288|ref|XP_533859.1| PREDICTED: similar to zinc finger, DHHC domain containing 3 isoform 1 [...
3.0E-77 [1..299] [1..299]
gi|115497202, gi... - gi|76625692|ref|XP_876909.1| PREDICTED: similar to zinc finger, DHHC domain containing 3 isoform 5 [...
2.0E-76 [1..299] [1..299]
ZDHC3_MOUSE - Palmitoyltransferase ZDHHC3 OS=Mus musculus GN=Zdhhc3 PE=1 SV=1
2.0E-72 [1..299] [1..299]
gi|109041131 - gi|109041131|ref|XP_001114753.1| PREDICTED: zinc finger, DHHC-type containing 3 isoform 3 [Macaca mu...
4.0E-72 [1..299] [1..299]
gi|56789412, gi|... - gi|89272059|emb|CAJ82857.1| zinc finger, DHHC domain containing 3 [Xenopus tropicalis], gi|58332276|...
5.0E-72 [2..299] [1..298]
gi|148224106, gi... - gi|50416479|gb|AAH77995.1| MGC82349 protein [Xenopus laevis], gi|148224106|ref|NP_001087110.1| MGC82...
6.0E-71 [2..299] [1..298]

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Predicted Domain #1
Region A:
Residues: [1-187]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MMLIPTHHFR NIERKPEYLQ PEKCVPPPYP GPVGTMWFIR DGCGIACAIV TWFLVLYAEF  60
   61 VVLFVMLIPS RDYVYSIING IVFNLLAFLA LASHCRAMLT DPGAVPKGNA TKEFIESLQL 120
  121 KPGQVVYKCP KCCSIKPDRA HHCSVCKRCI RKMDHHCPWV NNCVGENNQK YFVLFTMYIA 180
  181 LISLHAL

[Run NCBI BLAST on this sequence.]

Detection Method: FFAS03
Confidence: 0.981
Match: 2fug9
Description: Crystal structure of the hydrophilic domain of respiratory complex I from Thermus thermophilus
Matching Structure (courtesy of the PDB):

Predicted functions:

Term Confidence Notes
protein binding 0.646210551989356 bayes_pls_golite062009
binding 0.50942388426238 bayes_pls_golite062009
catalytic activity 0.481338897251745 bayes_pls_golite062009
transporter activity 0.0378208694761962 bayes_pls_golite062009

Predicted Domain #2
Region A:
Residues: [188-299]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 IMVGFHFLHC FEEDWTKCSS FSPPTTVILL ILLCFEGLLF LIFTSVMFGT QVHSICTDET  60
   61 GIEQLKKEER RWAKKTKWMN MKAVFGHPFS LGWASPFATP DQGKADPYQY VV

[Run NCBI BLAST on this sequence.]

Detection Method: MSA

Shown below is our most confident prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.


YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle