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View Structure Prediction Details

Protein: YPR089W
Organism: Saccharomyces cerevisiae
Length: 888 amino acids
Reference: Malmström L, et al. (2007) Superfamily assignments for the yeast proteome through integration of structure prediction with the gene ontology. PLoS Biol 5(4): e76. doi:10.1371/journal.pbio.0050076



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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for YPR089W.

Description E-value Query
Range
Subject
Range
YPR090W - YPR090W SGDID:S0006294, Chr XVI from 713728-715938
661.0 [0..153] [888..1]

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Predicted Domain #1
Region A:
Residues: [1-471]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MNSVWDDARI EDRTVDKPVG SSHAQEKLAL VKSTLFKLDQ EDRPECDSWV QLVKLICDED  60
   61 REEEFTTFKE LLREVKNVND KSVTGVALIH YIIVFDRADY IELLHDNPSG AKLDLNLVDD 120
  121 IVGYTPLMWS FSLQRRNCCL ELFNAFDEIN FNMTNKAGLT AWDMVPPYSP LSEFLEQNNM 180
  181 FRYRTEVKHE IPQISQPKDT SLLMSNEDST TKETFDNIDL QVAGLTLSPG ANDNMFLDSD 240
  241 EKNMNHSQGA ATLIDPTYTE DYHGTFDYDK LSPDQYLEFS DFDIPQILNL LISLPQKEPH 300
  301 MTTYPAGLIY QCIRYADHKI KSKPLVESLI NLSLTKILTS VSSNGAAGLV STEASLQAGD 360
  361 IVLQSYWLSC LSFLYYYLCR DDSFFKRHPS VLQELINTIH SIIIELTSSI HCRLISLIDS 420
  421 TLLAYTTIQD VKQTLYKRDW NFFKKRKQAK LLLKEKNRKQ LKEQQKKELH R

[Run NCBI BLAST on this sequence.]

Detection Method: PSI-BLAST
Confidence: 68.045757
Match: 1n11A
Description: Ankyrin-R
Matching Structure (courtesy of the PDB):

Predicted functions:

Term Confidence Notes
binding 0.329297728713027 bayes_pls_golite062009
protein binding 0.185260661660339 bayes_pls_golite062009

Predicted Domain #2
Region A:
Residues: [472-706]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 KSQGQENHEE EEGQQDGNDS DDRASTNDDN NSSVSLFYDK EILRHLYPPS FEEQMKPSPL  60
   61 KIVQIFGALS YVLNLHQTHP IFQQQCLSIS VNWFATTLFN KILKDKKKRS LSRAHAIQIR 120
  121 LNLSTLESWI QNNDFCVPKP MLIDDFMWQR FPMTLIRDVG EIDLSDPILR NVATYKPIDE 180
  181 NNKDLIYDTS NSLFYYQPFH KIAQIHLEPV FQLLQWLQVA TTLDSEESLI STMNL

[Run NCBI BLAST on this sequence.]

Detection Method: PSI-BLAST
Confidence: 45.30103
Match: 2f6hX
Description: Myosin V cargo binding domain
Matching Structure (courtesy of the PDB):

Predicted Domain #3
Region A:
Residues: [707-888]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 LPRITPVQLL KSMEKYNYEL NENKFNSKLK KFLNNKIKDS KMSKADAYLQ EHEIPYLVLP  60
   61 TIPEMTDLYS KGPDSHSFQP FLPGSIQDDV YEIHDVNFKQ RQNEPQISRT NSGTSDFTGD 120
  121 EDKAQYETEG VGESIDINET VEPESNAFNV GNDDYFKELN IPSSTAQRPA WSNNDDMEQN 180
  181 PW

[Run NCBI BLAST on this sequence.]

Detection Method: deduced

Shown below is our most confident de novo (Rosetta) prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.


YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle