YRC Public Data Repository - Protein Structure Prediction

Protein:	MRPL36
Organism:	Saccharomyces cerevisiae
Length:	177 amino acids
Reference:	Malmström L, et al. (2007) Superfamily assignments for the yeast proteome through integration of structure prediction with the gene ontology. PLoS Biol 5(4): e76. doi:10.1371/journal.pbio.0050076

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for MRPL36.

Description	E-value	Query Range	Subject Range
gi\|151946514 - gi\|151946514\|gb\|EDN64736.1\| YmL36 [Saccharomyces cerevisiae YJM789] gi\|190408721 - gi\|190408721\|gb\|EDV11986.1\| 60S ribosomal protein L36, mitochondrial precursor [Saccharomyces cerevi... MRPL36 - Mitochondrial ribosomal protein of the large subunit; overproduction suppresses mutations in the COX... gi\|207347668 - gi\|207347668\|gb\|EDZ73765.1\| YBR122Cp-like protein [Saccharomyces cerevisiae AWRI1631] RM36_YEAST - 54S ribosomal protein L36, mitochondrial OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN...	8.0E-56	[1..177]	[1..177]
gi\|44982236 - gi\|44982236\|gb\|AAS51545.1\| ADL375Wp [Ashbya gossypii ATCC 10895] gi\|45187498, gi\|... - gi\|45187498\|ref\|NP_983721.1\| ADL375Wp [Ashbya gossypii ATCC 10895], gi\|44982236\|gb\|AAS51545.1\| ADL37...	7.0E-49	[1..177]	[1..171]
gi\|40740613, gi\|... - gi\|67526275\|ref\|XP_661199.1\| hypothetical protein AN3595.2 [Aspergillus nidulans FGSC A4], ref\|XP_40...	6.0E-34	[15..168]	[27..159]
gi\|49067982, gi\|... - gi\|71004292\|ref\|XP_756812.1\| hypothetical protein UM00665.1 [Ustilago maydis 521], ref\|XP_398280.1\| ...	4.0E-26	[10..129]	[174..290]
gi\|46110260, gi\|... - gi\|46110260\|ref\|XP_382188.1\| hypothetical protein FG02012.1 [Gibberella zeae PH-1], gi\|42545719\|gb\|E...	4.0E-25	[9..128]	[27..129]
gi\|85102223 - gi\|85102223\|ref\|XP_961294.1\| hypothetical protein NCU04138 [Neurospora crassa OR74A] gi\|12718224, gi\|... - gi\|32405730\|ref\|XP_323478.1\| hypothetical protein [Neurospora crassa], gi\|28922837\|gb\|EAA32058.1\| pr...	2.0E-24	[11..114]	[40..129]
RL31_PROMM - 50S ribosomal protein L31 OS=Prochlorococcus marinus (strain MIT 9313) GN=rpmE PE=3 SV=1	5.0E-24	[35..137]	[2..92]
orf19.3205, orf1... - orf19.3205 CGDID:CAL0003196 Assembly 19, Contig19-10170 (87798, 87166) CDS, reverse complemented, tr... gi\|46436346, gi\|... - gi\|68482981\|ref\|XP_714621.1\| likely mitochondrial ribosomal protein MRPL36p [Candida albicans SC5314...	7.0E-23	[26..177]	[43..207]
gi\|153840404, gi... - gi\|153840404\|ref\|ZP_01993071.1\| ribosomal protein L31 [Vibrio parahaemolyticus AQ3810], gi\|149745932... RL31_VIBPA - 50S ribosomal protein L31 OS=Vibrio parahaemolyticus serotype O3:K6 (strain RIMD 2210633) GN=rpmE PE... RL31_VIBPA - 50S ribosomal protein L31 OS=Vibrio parahaemolyticus GN=rpmE PE=3 SV=1	2.0E-22	[36..113]	[2..73]
gi\|107104149 - gi\|107104149\|ref\|ZP_01368067.1\| hypothetical protein PaerPA_01005222 [Pseudomonas aeruginosa PACS2] gi\|194549229, gi... - gi\|84317704\|ref\|ZP_00966142.1\| COG0254: Ribosomal protein L31 [Pseudomonas aeruginosa C3719], gi\|254... RL31_PSEAE - 50S ribosomal protein L31 OS=Pseudomonas aeruginosa GN=rpmE PE=1 SV=1 gi\|194555054, gi... - gi\|84323864\|ref\|ZP_00971931.1\| COG0254: Ribosomal protein L31 [Pseudomonas aeruginosa 2192], gi\|2542... RL31_PSEA8 - 50S ribosomal protein L31 OS=Pseudomonas aeruginosa (strain LESB58) GN=rpmE PE=3 SV=1 RL31_PSEAB - 50S ribosomal protein L31 OS=Pseudomonas aeruginosa (strain UCBPP-PA14) GN=rpmE PE=1 SV=1 RL31_PSEAE - 50S ribosomal protein L31 OS=Pseudomonas aeruginosa (strain ATCC 15692 / PAO1 / 1C / PRS 101 / LMG 1...	2.0E-22	[36..113]	[2..71]

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Predicted Domain #1

Region A:
Residues: [1-177]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MLKSIFAKRF ASTGSYPGST RITLPRRPAK KIQLGKSRPA IYHQFNVKME LSDGSVVIRR  60
   61 SQYPKGEIRL IQDQRNNPLW NPSRDDLVVV DANSGGSLDR FNKRYSSLFS VDSTTPNSSS 120
  121 ETVELSEENK KKTQIKKEEK EDVSEKAFGM DDYLSLLDDS EQQIKSGKLA SKKRDKK

[Run NCBI BLAST on this sequence.]

Detection Method:

deduced

Shown below are all of our de novo (Rosetta) predictions for this domain.
Click here to view only most confident match.

Found no structure predictions for this domain.

Predicted functions:

Term	Confidence	Notes
structural constituent of ribosome	9.93798084434094	bayes_pls_golite062009
structural molecule activity	9.3625249805433	bayes_pls_golite062009
binding	1.31016553389632	bayes_pls_golite062009
protein binding	0.597909497479366	bayes_pls_golite062009

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits

Predicted functions: