| Protein: | SYN8 |
| Organism: | Saccharomyces cerevisiae |
| Length: | 255 amino acids |
| Reference: | Malmström L, et al. (2007) Superfamily assignments for the yeast proteome through integration of structure prediction with the gene ontology. PLoS Biol 5(4): e76. doi:10.1371/journal.pbio.0050076 |
Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for SYN8.
| Description | E-value | Query Range |
Subject Range |
|
|
1.0E-41 | [3..253] | [8..251] |
|
|
3.0E-39 | [3..253] | [34..277] |
|
|
4.0E-39 | [3..253] | [37..280] |
|
|
5.0E-39 | [3..253] | [36..279] |
|
|
5.0E-39 | [3..253] | [37..280] |
|
Region A: Residues: [1-255] |
1 11 21 31 41 51
| | | | | |
1 MDVLKLGYEL DQLSDLVEER TRLVSVLKLA PTSNDNVTLK RQLGSILELL QKCAPNDELI 60
61 SRYNTILDKI PDTAVDKELY RFQQQVARNT DEVSKESLKK VRFKNDDELT VMYKDDDEQD 120
121 EESPLPSTHT PYKDEPLQSQ LQSQSQPQPP QPMVSNQELF INQQQQLLEQ DSHLGALSQS 180
181 IGRTHDISLD LNNEIVSQND SLLVDLENLI DNNGRNLNRA SRSMHGFNNS RFKDNGNCVI 240
241 ILVLIVVLLL LLLVL
|
| Detection Method: |  |
| Confidence: | 33.09691 |
| Match: | 1dn1B_ |
| Description: | Syntaxin 1A N-terminal domain |
Matching Structure (courtesy of the PDB): |
|
| Term | Confidence | Notes |
| SNAP receptor activity | 2.83778981988519 | bayes_pls_golite062009 |
| protein binding | 2.01524199895183 | bayes_pls_golite062009 |
| binding | 1.63807440800487 | bayes_pls_golite062009 |
| transporter activity | 0.487715383686856 | bayes_pls_golite062009 |
| SNARE binding | 0.44377480710212 | bayes_pls_golite062009 |
| protein transporter activity | 0.268987748407298 | bayes_pls_golite062009 |
| substrate-specific transporter activity | 0.0443963926233321 | bayes_pls_golite062009 |
