YRC Public Data Repository - Protein Structure Prediction

Protein:	FCERB_MOUSE
Organism:	Mus musculus
Length:	235 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for FCERB_MOUSE.

Description	E-value	Query Range	Subject Range
FCERB_RAT - High affinity immunoglobulin epsilon receptor subunit beta OS=Rattus norvegicus GN=Ms4a2 PE=1 SV=1	287.0	[0..1]	[235..1]
gi\|47522994, gi\|... - gi\|47522994\|ref\|NP_999257.1\| membrane-spanning 4-domains, subfamily A, member 2 [Sus scrofa], gi\|219...	278.0	[0..1]	[235..1]
gi\|5042355, gi\|5... - gi\|50978912\|ref\|NP_001003172.1\| membrane-spanning 4-domains, subfamily A, member 2 [Canis lupus fami...	271.0	[0..1]	[235..1]
gi\|14530172 - gi\|14530172\|emb\|CAC42226.1\| high affinity IgE receptor beta subunit [Ovis aries]	268.0	[0..1]	[235..1]
gi\|149725171, gi... - gi\|149725171\|ref\|XP_001501500.1\| PREDICTED: high affinity IgE receptor beta subunit [Equus caballus]...	265.0	[0..1]	[231..1]
gi\|109106011 - gi\|109106011\|ref\|XP_001088362.1\| PREDICTED: membrane-spanning 4-domains, subfamily A, member 2 (Fc f...	258.0	[0..1]	[235..1]
MS4A2 - membrane-spanning 4-domains, subfamily A, member 2 (Fc fragment of IgE, high affinity I, receptor fo...	253.0	[0..1]	[234..1]
gi\|74184210 - gi\|74184210\|dbj\|BAE25661.1\| unnamed protein product [Mus musculus]	252.0	[0..1]	[235..1]
gi\|114637722, gi... - gi\|114637722\|ref\|XP_001136780.1\| PREDICTED: membrane-spanning 4-domains, subfamily A, member 2 isofo...	242.0	[0..1]	[234..1]

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Predicted Domain #1

Region A:
Residues: [1-235]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MDTENRSRAD LALPNPQESS SAPDIELLEA SPAKAAPPKQ TWRTFLKKEL EFLGATQILV  60
   61 GLICLCFGTI VCSVLYVSDF DEEVLLLYKL GYPFWGAVLF VLSGFLSIIS ERKNTLYLVR 120
  121 GSLGANIVSS IAAGTGIAML ILNLTNNFAY MNNCKNVTED DGCFVASFTT ELVLMMLFLT 180
  181 ILAFCSAVLF TIYRIGQELE SKKVPDDRLY EELNVYSPIY SELEDKGETS SPVDS

[Run NCBI BLAST on this sequence.]

Detection Method:	FFAS03
Confidence:	0.951
Match:	1q16C
Description:	Crystal structure of Nitrate Reductase A, NarGHI, from Escherichia coli
Matching Structure (courtesy of the PDB):

Predicted functions:

Term	Confidence	Notes
binding	1.54554694821029	bayes_pls_golite062009
catalytic activity	0.43294393089871	bayes_pls_golite062009

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits

Predicted functions: