YRC Public Data Repository - Protein Structure Prediction

Protein:	MRP2
Organism:	Saccharomyces cerevisiae
Length:	115 amino acids
Reference:	Malmström L, et al. (2007) Superfamily assignments for the yeast proteome through integration of structure prediction with the gene ontology. PLoS Biol 5(4): e76. doi:10.1371/journal.pbio.0050076

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for MRP2.

Description	E-value	Query Range	Subject Range
gi\|238013616, gi... - gi\|4803710\|emb\|CAB42658.1\| iron sulfur subunit of succinate dehydrogenase (truncated) and ribosomal ...	5.0E-30	[3..115]	[236..348]
RR14_MESVI - 30S ribosomal protein S14, chloroplastic OS=Mesostigma viride GN=rps14 PE=3 SV=1	3.0E-29	[18..115]	[4..100]
gi\|28611030 - gi\|28611030\|emb\|CAD62368.1\| chimeric SDH2-RPS14 protein [Triticum aestivum]	4.0E-29	[16..115]	[267..366]
RS14_BORPA - 30S ribosomal protein S14 OS=Bordetella parapertussis (strain 12822 / ATCC BAA-587 / NCTC 13253) GN=... RS14_BORBR - 30S ribosomal protein S14 OS=Bordetella bronchiseptica (strain ATCC BAA-588 / NCTC 13252 / RB50) GN=... RS14_BORPE - 30S ribosomal protein S14 OS=Bordetella pertussis (strain Tohama I / ATCC BAA-589 / NCTC 13251) GN=r... RS14_BORBR - 30S ribosomal protein S14 OS=Bordetella bronchiseptica GN=rpsN PE=3 SV=1 RS14_BORPA - 30S ribosomal protein S14 OS=Bordetella parapertussis GN=rpsN PE=3 SV=1 RS14_BORPE - 30S ribosomal protein S14 OS=Bordetella pertussis GN=rpsN PE=3 SV=1	2.0E-28	[19..115]	[5..101]
gi\|5688945, gi\|2... - gi\|5688950\|dbj\|BAA82751.1\| mitochondrial ribosomal portein S14 [Oryza sativa Japonica Group], gi\|568...	6.0E-28	[3..115]	[238..350]
tr\|J4SJ32\|J4SJ32... - 30S ribosomal protein S14 OS=Pasteurella multocida subsp. multocida str. Anand1_cattle GN=rpsN PE=3 ... RS14_PASMU - 30S ribosomal protein S14 OS=Pasteurella multocida (strain Pm70) GN=rpsN PE=3 SV=1 RS14_PASMU - 30S ribosomal protein S14 OS=Pasteurella multocida GN=rpsN PE=3 SV=1	2.0E-27	[18..115]	[4..101]
gi\|188013860, gi... - gi\|188013860\|gb\|EDU51982.1\| ribosomal protein S14p [Escherichia coli O157:H7 str. EC4113], gi\|168752... gi\|168803087, gi... - gi\|189375191\|gb\|EDU93607.1\| ribosomal protein S14p [Escherichia coli O157:H7 str. EC508], gi\|1688030... gi\|168785121, gi... - gi\|189374344\|gb\|EDU92760.1\| ribosomal protein S14p [Escherichia coli O157:H7 str. EC869], gi\|1687851... gi\|168769170, gi... - gi\|189361724\|gb\|EDU80143.1\| ribosomal protein S14p [Escherichia coli O157:H7 str. EC4486], gi\|168769... gi\|189359203, gi... - gi\|189359203\|gb\|EDU77622.1\| ribosomal protein S14p [Escherichia coli O157:H7 str. EC4401], gi\|168753... gi\|227883438, gi... - gi\|227883438\|ref\|ZP_04001243.1\| 30S ribosomal protein S14 [Escherichia coli 83972], gi\|227839582\|gb\|... gi\|238902398, gi... - gi\|238902398\|ref\|YP_002928194.1\| 30S ribosomal subunit protein S14 [Escherichia coli BW2952], gi\|238... gi\|237703037, gi... - gi\|237703037\|ref\|ZP_04533518.1\| 30S ribosomal subunit protein S14 [Escherichia sp. 3_2_53FAA], gi\|22... gi\|254289985, gi... - gi\|254289985\|ref\|YP_003055733.1\| 30S ribosomal protein S14 [Escherichia coli BL21(DE3)], gi\|25397929... gi\|251786561, gi... - gi\|251786561\|ref\|YP_003000865.1\| hypothetical protein B21_03109 [Escherichia coli BL21], gi\|24237883... gi\|253975136, gi... - gi\|254163235\|ref\|YP_003046343.1\| 30S ribosomal protein S14 [Escherichia coli B str. REL606], gi\|2539... gi\|254038468, gi... - gi\|254038468\|ref\|ZP_04872524.1\| ribosomal protein S14p [Escherichia sp. 1_1_43], gi\|226838974\|gb\|EEH... gi\|254795244, gi... - gi\|254795244\|ref\|YP_003080081.1\| 30S ribosomal subunit protein S14 [Escherichia coli O157:H7 str. TW... gi\|89110703, gi\|... - gi\|89110703\|ref\|AP_004483.1\| 30S ribosomal subunit protein S14 [Escherichia coli str. K-12 substr. W... gi\|13363645, gi\|... - gi\|15833426\|ref\|NP_312199.1\| 30S ribosomal protein S14 [Escherichia coli O157:H7 str. Sakai], gi\|133... RS14_ECOHS - 30S ribosomal protein S14 OS=Escherichia coli O9:H4 (strain HS) GN=rpsN PE=3 SV=1 RS14_ECOL5 - 30S ribosomal protein S14 OS=Escherichia coli O6:K15:H31 (strain 536 / UPEC) GN=rpsN PE=3 SV=1 RS14_ECO24 - 30S ribosomal protein S14 OS=Escherichia coli O139:H28 (strain E24377A / ETEC) GN=rpsN PE=3 SV=1 RS14_SHIF8 - 30S ribosomal protein S14 OS=Shigella flexneri serotype 5b (strain 8401) GN=rpsN PE=3 SV=1 RS14_SHIDS - 30S ribosomal protein S14 OS=Shigella dysenteriae serotype 1 (strain Sd197) GN=rpsN PE=3 SV=1 RS14_SHIBS - 30S ribosomal protein S14 OS=Shigella boydii serotype 4 (strain Sb227) GN=rpsN PE=3 SV=1 RS14_SHISS - 30S ribosomal protein S14 OS=Shigella sonnei (strain Ss046) GN=rpsN PE=3 SV=1 EG10913 - 30S ribosomal subunit protein S14 / 30S ribosomal subunit protein S14 RS14_ECOL6 - 30S ribosomal protein S14 OS=Escherichia coli O6 GN=rpsN PE=3 SV=2 RS14_ECOUT - 30S ribosomal protein S14 OS=Escherichia coli (strain UTI89 / UPEC) GN=rpsN PE=3 SV=1 gi\|195939856 - gi\|195939856\|ref\|ZP_03085238.1\| 30S ribosomal protein S14 [Escherichia coli O157:H7 str. EC4024] gi\|194421050, gi... - gi\|194439998\|ref\|ZP_03072056.1\| ribosomal protein S14p [Escherichia coli 101-1], gi\|194421050\|gb\|EDX... gi\|194435065, gi... - gi\|194435065\|ref\|ZP_03067303.1\| ribosomal protein S14p [Shigella dysenteriae 1012], gi\|194416672\|gb\|... gi\|194411282, gi... - gi\|194430674\|ref\|ZP_03063114.1\| ribosomal protein S14p [Escherichia coli B171], gi\|194411282\|gb\|EDX2... RS14_ECO5E - 30S ribosomal protein S14 OS=Escherichia coli O157:H7 (strain EC4115 / EHEC) GN=rpsN PE=3 SV=1 gi\|208740097, gi... - gi\|208819974\|ref\|ZP_03260294.1\| ribosomal protein S14p [Escherichia coli O157:H7 str. EC4042], gi\|20... RS14_SHIFL - 30S ribosomal protein S14 OS=Shigella flexneri GN=rpsN PE=3 SV=2 gi\|208813439, gi... - gi\|208813439\|ref\|ZP_03254768.1\| ribosomal protein S14p [Escherichia coli O157:H7 str. EC4045], gi\|20... gi\|208726958, gi... - gi\|208807157\|ref\|ZP_03249494.1\| ribosomal protein S14p [Escherichia coli O157:H7 str. EC4206], gi\|20... gi\|24114585, gi\|... - gi\|24114585\|ref\|NP_709095.1\| 30S ribosomal protein S14 [Shigella flexneri 2a str. 301], gi\|24053781\|... gi\|170121541, gi... - gi\|170769484\|ref\|ZP_02903937.1\| ribosomal protein S14p [Escherichia albertii TW07627], gi\|170121541\|... RS14_ECOLI - 30S ribosomal protein S14 - Escherichia coli RS14_ECOSM - 30S ribosomal protein S14 OS=Escherichia coli (strain SMS-3-5 / SECEC) GN=rpsN PE=3 SV=1 gi\|30043654, gi\|... - gi\|30065392\|ref\|NP_839563.1\| 30S ribosomal protein S14 [Shigella flexneri 2a str. 2457T], gi\|3004365... RS14_ECODH - 30S ribosomal protein S14 OS=Escherichia coli (strain K12 / DH10B) GN=rpsN PE=3 SV=1 RS14_ECOL6 - 30S ribosomal protein S14 OS=Escherichia coli O6:H1 (strain CFT073 / ATCC 700928 / UPEC) GN=rpsN PE=... RS14_ECOLC - 30S ribosomal protein S14 OS=Escherichia coli (strain ATCC 8739 / DSM 1576 / Crooks) GN=rpsN PE=3 SV... EG10913 - 30S ribosomal subunit protein S14 / 30S ribosomal subunit protein S14 gi\|124498018, gi... - gi\|124532474\|ref\|ZP_01702233.1\| ribosomal protein S14 [Escherichia coli B], gi\|124498018\|gb\|EAY45553... gi\|193066490, gi... - gi\|193066490\|ref\|ZP_03047534.1\| ribosomal protein S14p [Escherichia coli E22], gi\|192925871\|gb\|EDV80... RS14_ECO57 - 30S ribosomal protein S14 OS=Escherichia coli O157:H7 GN=rpsN PE=3 SV=2 RS14_ECOK1 - 30S ribosomal protein S14 OS=Escherichia coli O1:K1 / APEC GN=rpsN PE=3 SV=1 gi\|191174454, gi... - gi\|191174454\|ref\|ZP_03035955.1\| ribosomal protein S14p [Escherichia coli F11], gi\|190905262\|gb\|EDV64... gi\|188489173, gi... - gi\|188493974\|ref\|ZP_03001244.1\| ribosomal protein S14p [Escherichia coli 53638], gi\|188489173\|gb\|EDU... gi\|15803834, gi\|... - gi\|15803834\|ref\|NP_289868.1\| 30S ribosomal protein S14 [Escherichia coli O157:H7 EDL933], gi\|1251793... RS14_SHIB3 - 30S ribosomal protein S14 OS=Shigella boydii serotype 18 (strain CDC 3083-94 / BS512) GN=rpsN PE=3 S... RS14_ECOLU - 30S ribosomal protein S14 OS=Escherichia coli O17:K52:H18 (strain UMN026 / ExPEC) GN=rpsN PE=3 SV=1 RS14_ESCF3 - 30S ribosomal protein S14 OS=Escherichia fergusonii (strain ATCC 35469 / DSM 13698 / CDC 0568-73) GN... gi\|217322059, gi... - gi\|217325838\|ref\|ZP_03441922.1\| ribosomal protein S14p [Escherichia coli O157:H7 str. TW14588], gi\|2... gi\|215488607, gi... - gi\|215488607\|ref\|YP_002331038.1\| 30S ribosomal protein S14 [Escherichia coli O127:H6 str. E2348/69],... RS14_ECOSE - 30S ribosomal protein S14 OS=Escherichia coli (strain SE11) GN=rpsN PE=3 SV=1 RS14_ECO7I - 30S ribosomal protein S14 OS=Escherichia coli O7:K1 (strain IAI39 / ExPEC) GN=rpsN PE=3 SV=1 gi\|218353731, gi... - gi\|218696999\|ref\|YP_002404666.1\| 30S ribosomal protein S14 [Escherichia coli 55989], gi\|218353731\|em... gi\|218429157, gi... - gi\|218691593\|ref\|YP_002399805.1\| 30S ribosomal protein S14 [Escherichia coli ED1a], gi\|218429157\|emb... RS14_ECO45 - 30S ribosomal protein S14 OS=Escherichia coli O45:K1 (strain S88 / ExPEC) GN=rpsN PE=3 SV=1	2.0E-27	[18..115]	[4..101]
gi\|151942938 - gi\|151942938\|gb\|EDN61284.1\| mitochondrial ribosomal small subunit component [Saccharomyces cerevisia... RT02_YEAST - 37S ribosomal protein MRP2, mitochondrial OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) G... gi\|190408090 - gi\|190408090\|gb\|EDV11355.1\| 14 kDa mitochondrial ribosomal protein [Saccharomyces cerevisiae RM11-1a... MRP2 - Mitochondrial ribosomal protein of the small subunit	2.0E-27	[1..115]	[1..115]
RS4_ECOLI - (P0A7V8) 30S ribosomal protein S4 RS4_ECOL6 - (P0A7V9) 30S ribosomal protein S4 RS4_ECO57 - (P0A7W0) 30S ribosomal protein S4	2.0E-27	[18..115]	[3..100]
RS14_HAEIN - 30S ribosomal protein S14 OS=Haemophilus influenzae (strain ATCC 51907 / DSM 11121 / KW20 / Rd) GN=r... gi\|145638408, gi... - gi\|145638408\|ref\|ZP_01794018.1\| 30S ribosomal protein S14 [Haemophilus influenzae PittII], gi\|145272... RS14_HAEIE - 30S ribosomal protein S14 OS=Haemophilus influenzae (strain PittEE) GN=rpsN PE=3 SV=2 gi\|144983927 - gi\|144983927\|gb\|EDJ91369.1\| 30S ribosomal protein S14 [Haemophilus influenzae R3021] RS14_HAEI8 - 30S ribosomal protein S14 OS=Haemophilus influenzae (strain 86-028NP) GN=rpsN PE=3 SV=1 gi\|229845841, gi... - gi\|229845841\|ref\|ZP_04465953.1\| 30S ribosomal protein S14 [Haemophilus influenzae 7P49H1], gi\|229810... gi\|229844658, gi... - gi\|229844658\|ref\|ZP_04464797.1\| 30S ribosomal protein S14 [Haemophilus influenzae 6P18H1], gi\|229812... gi\|145634798, gi... - gi\|145634798\|ref\|ZP_01790506.1\| 30S ribosomal protein S14 [Haemophilus influenzae PittAA], gi\|145267... gi\|145270177, gi... - gi\|145636651\|ref\|ZP_01792318.1\| 30S ribosomal protein S14 [Haemophilus influenzae PittHH], gi\|145270... gi\|145630537 - gi\|145630537\|ref\|ZP_01786317.1\| 30S ribosomal protein S14 [Haemophilus influenzae 22.4-21] gi\|144987056, gi... - gi\|145632149\|ref\|ZP_01787884.1\| 30S ribosomal protein S14 [Haemophilus influenzae 3655], gi\|14498705... RS14_HAEIN - 30S ribosomal protein S14 OS=Haemophilus influenzae GN=rpsN PE=3 SV=2 gi\|42630381 - gi\|42630381\|ref\|ZP_00155925.1\| COG0199: Ribosomal protein S14 [Haemophilus influenzae R2846] gi\|42631108 - gi\|42631108\|ref\|ZP_00156646.1\| COG0199: Ribosomal protein S14 [Haemophilus influenzae R2866]	4.0E-27	[18..115]	[4..101]

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Predicted Domain #1

Region A:
Residues: [1-115]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MGNFRFPIKT KLPPGFINAR ILRDNFKRQQ FKENEILVKS LKFIARNMNL PTKLRLEAQL  60
   61 KLNALPNYMR STQIKNRCVD SGHARFVLSD FRLCRYQFRE NALKGNLPGV KKGIW

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	92.37734
Match:	1p87N_
Description:	70S ribosome functional complex
Matching Structure (courtesy of the PDB):

Predicted functions:

Term	Confidence	Notes
structural constituent of ribosome	6.46626105355287	bayes_pls_golite062009
structural molecule activity	5.9950507001335	bayes_pls_golite062009
binding	2.38688645545392	bayes_pls_golite062009
transcription regulator activity	2.06638295156835	bayes_pls_golite062009
nucleic acid binding	1.86905163192306	bayes_pls_golite062009
DNA binding	1.86136246408845	bayes_pls_golite062009
protein binding	1.60194768638501	bayes_pls_golite062009
transcription factor activity	1.28200214216555	bayes_pls_golite062009
transcription factor binding	1.02376991656046	bayes_pls_golite062009
sequence-specific DNA binding	0.48169971060149	bayes_pls_golite062009
transcription activator activity	0.42927665410421	bayes_pls_golite062009
cytoskeletal protein binding	0.405267736307896	bayes_pls_golite062009
RNA polymerase II transcription factor activity	0.33193976709857	bayes_pls_golite062009
transcription cofactor activity	0.29526103320546	bayes_pls_golite062009
ligand-dependent nuclear receptor activity	0.27479486808555	bayes_pls_golite062009
catalytic activity	0.101795606736461	bayes_pls_golite062009

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits

Predicted functions: