YRC Public Data Repository - Protein Structure Prediction

Protein:	YPR114W
Organism:	Saccharomyces cerevisiae
Length:	315 amino acids
Reference:	Malmström L, et al. (2007) Superfamily assignments for the yeast proteome through integration of structure prediction with the gene ontology. PLoS Biol 5(4): e76. doi:10.1371/journal.pbio.0050076

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for YPR114W.

Description	E-value	Query Range	Subject Range
YP114_YEAST - Uncharacterized TLC domain-containing protein YPR114W OS=Saccharomyces cerevisiae (strain ATCC 20450... YPR114W - Putative protein of unknown function	6.0E-68	[1..315]	[1..315]
gi\|113534153, gi... - gi\|34909246\|ref\|NP_915970.1\| B1148D12.11 [Oryza sativa (japonica cultivar-group)], gi\|15528785\|dbj\|B...	3.0E-48	[50..314]	[5..260]
gi\|79319015, gi\|... - gi\|79319015\|ref\|NP_001031121.1\| unknown protein [Arabidopsis thaliana], gi\|20466069\|gb\|AAM19956.1\| A...	2.0E-47	[46..304]	[17..275]
gi\|7507776 - gi\|7507776\|pir\|\|T16867 probable cytochrome P450 T13C5.1 [similarity] - Caenorhabditis elegans	5.0E-45	[61..307]	[18..258]
gi\|157071803, gi... - gi\|164427582\|ref\|XP_965364.2\| hypothetical protein NCU02977 [Neurospora crassa OR74A], gi\|157071803\|... gi\|16945392 - gi\|16945392\|emb\|CAB97314.2\| conserved hypothetical protein [Neurospora crassa]	3.0E-40	[35..309]	[32..310]
TMEM56 - transmembrane protein 56	9.0E-38	[53..312]	[5..261]

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Predicted Domain #1

Region A:
Residues: [1-77]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MDVLLSLPQP ELFKTTVIPF LANRNIIKSE AILSNLHSIF YVAIFYHIWF LFGKWILFPH  60
   61 LVKWKLDYDQ KHNVKKD

[Run NCBI BLAST on this sequence.]

Detection Method:

deduced

Shown below is our most confident de novo (Rosetta) prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

Predicted Domain #2

Region A:
Residues: [78-315]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 EKTTSERQAQ HYKKKYTSLI NQSSVHLISL LQSIVVLYYS LKFLLDPKAS AEPYQTSHSR  60
   61 VFTENRDTQV ICIFAIGYFV WDIYISTMYS TFPFVVHGII STVVFCIGLK PYIQYYAPVF 120
  121 LMFELSNPSL NFRWFGIKFL PQKSKFCSLL LLLNNLTLMV VFFAARIAWG WFQIGKLCYD 180
  181 FYQVRNEPGF LVFDTIVILA GNFVLDILNV IWFSTMVSVA AKVLKKGESV DKVTKNEQ

[Run NCBI BLAST on this sequence.]

Detection Method:

MSA

Shown below is our most confident prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits