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View Structure Prediction Details

Protein: YPR015C
Organism: Saccharomyces cerevisiae
Length: 247 amino acids
Reference: Malmström L, et al. (2007) Superfamily assignments for the yeast proteome through integration of structure prediction with the gene ontology. PLoS Biol 5(4): e76. doi:10.1371/journal.pbio.0050076



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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for YPR015C.

Description E-value Query
Range
Subject
Range
ZSCAN20 - zinc finger and SCAN domain containing 20
0.0 [3..247] [646..953]

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Predicted Domain #1
Region A:
Residues: [1-132]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MWRTKTLESM LCSPMKCSSS NIGGSYAQSS KEVSNTTKRE VHLPPCSSIM HAPLTPEINQ  60
   61 AALPPPAYHY APSSLHQTED PVWRSSPNSI IFSPVIATPQ PFPLTFVERQ SCCPIYSTAA 120
  121 SSYTAQSVPP SM

[Run NCBI BLAST on this sequence.]

Detection Method: MSA

Shown below is our most confident prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

Predicted Domain #2
Region A:
Residues: [133-247]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 QHFQEENHRA VSNEQYSLPN VHIGQNPGTL LSQTQTDLDL IQKQLRAVVK LRKQCPICGK  60
   61 VCSRPSTLRT HYLIHTGDTP FKCTWEHCNK SFNVKSNMLR HLRTHQKKIA KKKHQ

[Run NCBI BLAST on this sequence.]

Detection Method: PSI-BLAST
Confidence: 89.522879
Match: 1ubdC_
Description: Ying-yang 1 (yy1, zinc finger domain)
Matching Structure (courtesy of the PDB):

YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle