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View Structure Prediction Details

Protein: YPR015C
Organism: Saccharomyces cerevisiae
Length: 247 amino acids
Reference: Malmström L, et al. (2007) Superfamily assignments for the yeast proteome through integration of structure prediction with the gene ontology. PLoS Biol 5(4): e76. doi:10.1371/journal.pbio.0050076



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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for YPR015C.

Description E-value Query
Range
Subject
Range
ZSCAN20 - zinc finger and SCAN domain containing 20
0.0 [3..247] [646..953]

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Predicted Domain #1
Region A:
Residues: [1-132]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MWRTKTLESM LCSPMKCSSS NIGGSYAQSS KEVSNTTKRE VHLPPCSSIM HAPLTPEINQ  60
   61 AALPPPAYHY APSSLHQTED PVWRSSPNSI IFSPVIATPQ PFPLTFVERQ SCCPIYSTAA 120
  121 SSYTAQSVPP SM

[Run NCBI BLAST on this sequence.]

Detection Method: MSA

Shown below are all of our structure predictions for this domain.
Click here to view only most confident match.

    MCM
Score
GO
Score
GO
Term
SCOP
Match
SCOP Description
View Download 0.462 N/A N/A a.45.1 Glutathione S-transferase (GST), C-terminal domain
View Download 0.408 N/A N/A a.79.1 Antitermination factor NusB
View Download 0.392 N/A N/A d.58.26 GHMP Kinase, C-terminal domain
View Download 0.332 N/A N/A a.25.2 Thermoplasma ferritin-like 4-helical bundle
View Download 0.282 N/A N/A a.118.8 TPR-like

Predicted Domain #2
Region A:
Residues: [133-247]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 QHFQEENHRA VSNEQYSLPN VHIGQNPGTL LSQTQTDLDL IQKQLRAVVK LRKQCPICGK  60
   61 VCSRPSTLRT HYLIHTGDTP FKCTWEHCNK SFNVKSNMLR HLRTHQKKIA KKKHQ

[Run NCBI BLAST on this sequence.]

Detection Method: PSI-BLAST
Confidence: 89.522879
Match: 1ubdC_
Description: Ying-yang 1 (yy1, zinc finger domain)
Matching Structure (courtesy of the PDB):

YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle