YRC Public Data Repository - Protein Structure Prediction

Protein:	RPL36B
Organism:	Saccharomyces cerevisiae
Length:	100 amino acids
Reference:	Malmström L, et al. (2007) Superfamily assignments for the yeast proteome through integration of structure prediction with the gene ontology. PLoS Biol 5(4): e76. doi:10.1371/journal.pbio.0050076

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for RPL36B.

Description	E-value	Query Range	Subject Range
gi\|94368091, gi\|... - gi\|94368091\|ref\|XP_985262.1\| PREDICTED: similar to ribosomal protein L36 [Mus musculus], gi\|82884369...	158.0	[0..1]	[99..38]
gi\|109081357 - gi\|109081357\|ref\|XP_001100689.1\| PREDICTED: similar to ribosomal protein L36 [Macaca mulatta]	150.0	[0..1]	[99..1]
gi\|60652577 - gi\|60652577\|gb\|AAX28983.1\| ribosomal protein L36 [synthetic construct]	146.0	[0..1]	[94..1]
gi\|55622646 - gi\|55622646\|ref\|XP_526581.1\| PREDICTED: similar to 60S ribosomal protein L36 [Pan troglodytes]	146.0	[0..1]	[99..1]

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Predicted Domain #1

Region A:
Residues: [1-100]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MAVKTGIAIG LNKGKKVTQM TPAPKISYKK GAASNRTKFV RSLVREIAGL SPYERRLIDL  60
   61 IRNSGEKRAR KVAKKRLGSF TRAKAKVEEM NNIIAASRRH

[Run NCBI BLAST on this sequence.]

Detection Method:	Pfam
Confidence:	67.721246
Match:	PF01158.9
Description:	No description for PF01158.9 was found.

Shown below is our most confident prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits