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View Structure Prediction Details

Protein: RPL36B
Organism: Saccharomyces cerevisiae
Length: 100 amino acids
Reference: Malmström L, et al. (2007) Superfamily assignments for the yeast proteome through integration of structure prediction with the gene ontology. PLoS Biol 5(4): e76. doi:10.1371/journal.pbio.0050076



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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for RPL36B.

Description E-value Query
Range
Subject
Range
gi|94368091, gi|... - gi|94368091|ref|XP_985262.1| PREDICTED: similar to ribosomal protein L36 [Mus musculus], gi|82884369...
158.0 [0..1] [99..38]
gi|109081357 - gi|109081357|ref|XP_001100689.1| PREDICTED: similar to ribosomal protein L36 [Macaca mulatta]
150.0 [0..1] [99..1]
gi|60652577 - gi|60652577|gb|AAX28983.1| ribosomal protein L36 [synthetic construct]
146.0 [0..1] [94..1]
gi|55622646 - gi|55622646|ref|XP_526581.1| PREDICTED: similar to 60S ribosomal protein L36 [Pan troglodytes]
146.0 [0..1] [99..1]

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Predicted Domain #1
Region A:
Residues: [1-100]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MAVKTGIAIG LNKGKKVTQM TPAPKISYKK GAASNRTKFV RSLVREIAGL SPYERRLIDL  60
   61 IRNSGEKRAR KVAKKRLGSF TRAKAKVEEM NNIIAASRRH 

[Run NCBI BLAST on this sequence.]

Detection Method: Pfam
Confidence: 67.721246
Match: PF01158.9
Description: No description for PF01158.9 was found.

Shown below are all of our structure predictions for this domain.
Click here to view only most confident match.

    MCM
Score
GO
Score
GO
Term
SCOP
Match
SCOP Description
View Download 0.667 N/A N/A a.118.9 ENTH/VHS domain
View Download 0.655 N/A N/A a.60.5 Barrier-to-autointegration factor, BAF
View Download 0.650 N/A N/A a.163.1 Crustacean CHH/MIH/GIH neurohormone
View Download 0.577 N/A N/A a.118.8 TPR-like
View Download 0.560 N/A N/A a.118.8 TPR-like


YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle