| Protein: | PCL8 |
| Organism: | Saccharomyces cerevisiae |
| Length: | 492 amino acids |
| Reference: | Malmström L, et al. (2007) Superfamily assignments for the yeast proteome through integration of structure prediction with the gene ontology. PLoS Biol 5(4): e76. doi:10.1371/journal.pbio.0050076 |
Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for PCL8.
| Description | E-value | Query Range |
Subject Range |
|
|
0.0 | [1..492] | [1..492] |
|
|
6.0E-61 | [218..492] | [3..288] |
|
|
5.0E-60 | [218..492] | [3..288] |
|
|
5.0E-59 | [119..486] | [64..444] |
|
Region A: Residues: [1-290] |
1 11 21 31 41 51
| | | | | |
1 MANDQDPNKS LINDALTRSM SEFYDDDDDN DSDMCRANDE GEDVFDLPLK VGVSQSRNFS 60
61 EVNDVLDPLS SLHGPSKKVR FEQQKQQQQH QQLHNDFNTD FNLKSPSSKK MGVEQLIQSA 120
121 NEINDYLANN IDKVNSFNSE LLSGSGKLPG RVKSDTATQG TGRLDSMSNF ALSDTELDND 180
181 DDNYLLDPLA NASSTTPTVE HHGYSLLDKA LSTSDKEKIY TNKVNSNSQI DTDNHSHESG 240
241 NTTNNETDEN ESSEILDYTK FDSFPYPPSS APNGEPPDLK VLSIECEQEN
|
| Detection Method: |  |
Shown below is our most confident de novo (Rosetta) prediction for this domain.
Click here to view all matches.
Found no confident structure predictions for this domain.
|
Region A: Residues: [291-492] |
1 11 21 31 41 51
| | | | | |
1 EKELRRISLL LDHYESIPKI PELSDDEALS KFRENIELIL QLSKKINDNA NTLAISSEDP 60
61 QKFVNFVMKN PPSLSFRDFI DRIQNKCMFG AVVYLGATYL LQLVFLTRDE MDGPIKLKAK 120
121 LQEDQAHRII ISTIRIATKL LEDFVHSQNY ICKVFGISKR LLTKLEISFM ASVNFDGLMI 180
181 TCEKLEKTLH ILDDTRQALG NT
|
| Detection Method: | |
Shown below is our most confident prediction for this domain.
Click here to view all matches.
Found no confident structure predictions for this domain.
|
Region A: Residues: [309-492] |
1 11 21 31 41 51
| | | | | |
1 KIPELSDDEA LSKFRENIEL ILQLSKKIND NANTLAISSE DPQKFVNFVM KNPPSLSFRD 60
61 FIDRIQNKCM FGAVVYLGAT YLLQLVFLTR DEMDGPIKLK AKLQEDQAHR IIISTIRIAT 120
121 KLLEDFVHSQ NYICKVFGIS KRLLTKLEIS FMASVNFDGL MITCEKLEKT LHILDDTRQA 180
181 LGNT
|
| Detection Method: | |
| Confidence: | 1.39 |
| Match: | 1f5qB |
| Description: | Viral cyclin |
Matching Structure (courtesy of the PDB): |
|
| Term | Confidence | Notes |
| cyclin-dependent protein kinase regulator activity | 5.12463430024071 | bayes_pls_golite062009 |
| cyclin-dependent protein kinase activity | 1.93343502830716 | bayes_pls_golite062009 |
| binding | 1.73927974260891 | bayes_pls_golite062009 |
| protein binding | 1.37207701115974 | bayes_pls_golite062009 |
| transcription regulator activity | 1.31222872955439 | bayes_pls_golite062009 |
| nucleic acid binding | 0.802637318318368 | bayes_pls_golite062009 |
| kinase regulator activity | 0.753288291901404 | bayes_pls_golite062009 |
| protein kinase regulator activity | 0.713321295552366 | bayes_pls_golite062009 |
| DNA binding | 0.660292655137288 | bayes_pls_golite062009 |
| enzyme regulator activity | 0.461517963237846 | bayes_pls_golite062009 |
| transcription repressor activity | 0.290993164406505 | bayes_pls_golite062009 |
| general RNA polymerase II transcription factor activity | 0.181080585275576 | bayes_pls_golite062009 |
