| Protein: | NAB3 |
| Organism: | Saccharomyces cerevisiae |
| Length: | 802 amino acids |
| Reference: | Malmström L, et al. (2007) Superfamily assignments for the yeast proteome through integration of structure prediction with the gene ontology. PLoS Biol 5(4): e76. doi:10.1371/journal.pbio.0050076 |
Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for NAB3.
| Description | E-value | Query Range |
Subject Range |
|
|
0.0 | [1..802] | [1..802] |
|
|
3.0E-94 | [1..585] | [1..639] |
|
|
8.0E-26 | [1..374] | [1087..1466] |
|
Region A: Residues: [1-116] |
1 11 21 31 41 51
| | | | | |
1 MSDENHNSDV QDIPSPELSV DSNSNENELM NNSSADDGIE FDAPEEEREA EREEENEEQH 60
61 ELEDVNDEEE EDKEEKGEEN GEVINTEEEE EEEHQQKGGN DDDDDDNEEE EEEEED
|
| Detection Method: |  |
Shown below is our most confident de novo (Rosetta) prediction for this domain.
Click here to view all matches.
Found no confident structure predictions for this domain.
| Term | Confidence | Notes |
| binding | 2.40096962515027 | bayes_pls_golite062009 |
| transcription regulator activity | 2.15398264148864 | bayes_pls_golite062009 |
| nucleic acid binding | 1.95513305822187 | bayes_pls_golite062009 |
| DNA binding | 1.80079581406991 | bayes_pls_golite062009 |
| transcription factor activity | 1.15427978494805 | bayes_pls_golite062009 |
| protein binding | 0.757492117682468 | bayes_pls_golite062009 |
|
Region A: Residues: [117-400] |
1 11 21 31 41 51
| | | | | |
1 DDDDDDDDDD DEEEEEEEEE EGNDNSSVGS DSAAEDGEDE EDKKDKTKDK EVELRRETLE 60
61 KEQKDVDEAI KKITREENDN THFPTNMENV NYDLLQKQVK YIMDSNMLNL PQFQHLPQEE 120
121 KMSAILAMLN SNSDTALSVP PHDSTISTTA SASATSGARS NDQRKPPLSD AQRRMRFPRA 180
181 DLSKPITEEE HDRYAAYLHG ENKITEMHNI PPKSRLFIGN LPLKNVSKED LFRIFSPYGH 240
241 IMQINIKNAF GFIQFDNPQS VRDAIECESQ EMNFGKKLIL EVSS
|
| Detection Method: | |
| Confidence: | 3.154902 |
| Match: | 1epwA_ |
| Description: | Botulinum neurotoxin |
Matching Structure (courtesy of the PDB): |
|
| Term | Confidence | Notes |
| nucleic acid binding | 4.65259034341669 | bayes_pls_golite062009 |
| binding | 3.48033873254013 | bayes_pls_golite062009 |
| RNA binding | 2.51560202858525 | bayes_pls_golite062009 |
| transcription regulator activity | 2.2045206027152 | bayes_pls_golite062009 |
| DNA binding | 1.99030664201171 | bayes_pls_golite062009 |
| mRNA binding | 1.52376515340629 | bayes_pls_golite062009 |
| transcription factor activity | 1.09958329302628 | bayes_pls_golite062009 |
| protein binding | 1.05805521997665 | bayes_pls_golite062009 |
| RNA polymerase II transcription factor activity | 0.633093884585572 | bayes_pls_golite062009 |
| sequence-specific DNA binding | 0.327072171076297 | bayes_pls_golite062009 |
|
Region A: Residues: [401-558] |
1 11 21 31 41 51
| | | | | |
1 SNARPQFDHG DHGTNSSSTF ISSAKRPFQT ESGDMYNDDN GAGYKKSRRH TVSCNIFVKR 60
61 TADRTYAIEV FNRFRDGTGL ETDMIFLKPR MELGKLINDA AYNGVWGVVL VNKTHNVDVQ 120
121 TFYKGSQGET KFDEYISISA DDAVAIFNNI KNNRNNSR
|
| Detection Method: | |
Shown below is our most confident de novo (Rosetta) prediction for this domain.
Click here to view all matches.
Found no confident structure predictions for this domain.
|
Region A: Residues: [559-802] |
1 11 21 31 41 51
| | | | | |
1 PTDYRAMSHQ QNIYGAPPLP VPNGPAVGPP PQTNYYQGYS MPPPQQQQQQ PYGNYGMPPP 60
61 SHDQGYGSQP PIPMNQSYGR YQTSIPPPPP QQQIPQGYGR YQAGPPPQPP SQTPMDQQQL 120
121 LSAIQNLPPN VVSNLLSMAQ QQQQQPHAQQ QLVGLIQSMQ GQAPQQQQQQ LGGYSSMNSS 180
181 SPPPMSTNYN GQNISAKPSA PPMSHQPPPP QQQQQQQQQQ QQQQQQPAGN NVQSLLDSLA 240
241 KLQK
|
| Detection Method: | |
Shown below is our most confident prediction for this domain.
Click here to view all matches.
Found no confident structure predictions for this domain.
|
Region A: Residues: [679-802] |
1 11 21 31 41 51
| | | | | |
1 LSAIQNLPPN VVSNLLSMAQ QQQQQPHAQQ QLVGLIQSMQ GQAPQQQQQQ LGGYSSMNSS 60
61 SPPPMSTNYN GQNISAKPSA PPMSHQPPPP QQQQQQQQQQ QQQQQQPAGN NVQSLLDSLA 120
121 KLQK
|
| Detection Method: | |
Shown below is our most confident de novo (Rosetta) prediction for this domain.
Click here to view all matches.
Found no confident structure predictions for this domain.
