| Protein: | CUP9 |
| Organism: | Saccharomyces cerevisiae |
| Length: | 306 amino acids |
| Reference: | Malmström L, et al. (2007) Superfamily assignments for the yeast proteome through integration of structure prediction with the gene ontology. PLoS Biol 5(4): e76. doi:10.1371/journal.pbio.0050076 |
Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for CUP9.
| Description | E-value | Query Range |
Subject Range |
|
|
5.0E-57 | [1..306] | [1..306] |
|
|
3.0E-51 | [17..257] | [145..378] |
|
|
1.0E-49 | [17..238] | [108..322] |
|
|
2.0E-49 | [17..249] | [119..341] |
|
|
2.0E-49 | [17..238] | [106..322] |
|
|
2.0E-48 | [17..238] | [115..344] |
|
|
2.0E-48 | [17..238] | [108..323] |
|
|
3.0E-48 | [17..238] | [106..327] |
|
Region A: Residues: [1-127] |
1 11 21 31 41 51
| | | | | |
1 MNYNCEIQNR NSKNVDNQVS LPPIQVLFNS IEKRSMPELA FSNIEYSHGN LRSSTEEQNY 60
61 PAPVLLPQHH SIAYPAINSG GTSTTATPTA STVETSKTSS SAMDTQSQYG SSKKSKSASD 120
121 DAKPCYK
|
| Detection Method: |  |
Shown below are all of our structure predictions for this domain.
Click here to view only most confident match.
| MCM Score |
GO Score |
GO Term |
SCOP Match |
SCOP Description | ||
| View | Download | 0.253 | 0.212 | specific RNA polymerase II transcription factor activity | a.1.1 | Globin-like |
| View | Download | 0.255 | 0.024 | specific RNA polymerase II transcription factor activity | a.91.1 | Regulator of G-protein signalling, RGS |
| View | Download | 0.391 | 0.014 | specific RNA polymerase II transcription factor activity | c.53.1 | Resolvase-like |
| View | Download | 0.495 | 0.006 | specific RNA polymerase II transcription factor activity | a.18.1 | T4 endonuclease V |
| View | Download | 0.495 | N/A | N/A | a.18.1 | T4 endonuclease V |
| View | Download | 0.391 | N/A | N/A | c.53.1 | Resolvase-like |
| View | Download | 0.255 | N/A | N/A | a.91.1 | Regulator of G-protein signalling, RGS |
| View | Download | 0.253 | N/A | N/A | a.1.1 | Globin-like |
|
Region A: Residues: [128-306] |
1 11 21 31 41 51
| | | | | |
1 SAPIYEIINK EKDAGAQYNR PFSDFVESKS RRKQNSGRRS NLPKETVQIL NTWLLNHLNN 60
61 PYPTQQEKRE LLIKTGLTKI QLSNWFINVR RRKIFSDYYT LVNSIPNDNA NNTPVERVQN 120
121 VSAYHNTLSA TNNTMYDATS TCSTDYELSK RFAHAPVTRR KKLIDRLEEL KKLSNPDMN
|
| Detection Method: | |
| Confidence: | 92.0 |
| Match: | 1b72B_ |
| Description: | pbx1 |
Matching Structure (courtesy of the PDB): |
|
| Term | Confidence | Notes |
| transcription regulator activity | 5.13863038737912 | bayes_pls_golite062009 |
| DNA binding | 4.66369707598026 | bayes_pls_golite062009 |
| nucleic acid binding | 4.20953772435302 | bayes_pls_golite062009 |
| transcription factor activity | 4.06706589695599 | bayes_pls_golite062009 |
| RNA polymerase II transcription factor activity | 3.16896789933192 | bayes_pls_golite062009 |
| binding | 3.02779747447702 | bayes_pls_golite062009 |
| sequence-specific DNA binding | 2.41271657675151 | bayes_pls_golite062009 |
| general RNA polymerase II transcription factor activity | 2.37652234273616 | bayes_pls_golite062009 |
| transcription repressor activity | 1.91962622287073 | bayes_pls_golite062009 |
| transcription activator activity | 1.77700860354597 | bayes_pls_golite062009 |
| specific RNA polymerase II transcription factor activity | 1.73068440195944 | bayes_pls_golite062009 |
| transcription factor binding | 1.40653841901929 | bayes_pls_golite062009 |
| chromatin binding | 0.876241359231159 | bayes_pls_golite062009 |
| transcription cofactor activity | 0.84983974758882 | bayes_pls_golite062009 |
| protein binding | 0.830419844171551 | bayes_pls_golite062009 |
| transcription corepressor activity | 0.25931464844298 | bayes_pls_golite062009 |
