| Protein: | HHO1 |
| Organism: | Saccharomyces cerevisiae |
| Length: | 258 amino acids |
| Reference: | Malmström L, et al. (2007) Superfamily assignments for the yeast proteome through integration of structure prediction with the gene ontology. PLoS Biol 5(4): e76. doi:10.1371/journal.pbio.0050076 |
Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for HHO1.
| Description | E-value | Query Range |
Subject Range |
|
|
2.0E-24 | [38..199] | [163..319] |
|
|
2.0E-23 | [1..258] | [1..258] |
|
|
9.0E-23 | [38..164] | [433..556] |
|
Region A: Residues: [1-142] |
1 11 21 31 41 51
| | | | | |
1 MAPKKSTTKT TSKGKKPATS KGKEKSTSKA AIKKTTAKKE EASSKSYREL IIEGLTALKE 60
61 RKGSSRPALK KFIKENYPIV GSASNFDLYF NNAIKKGVEA GDFEQPKGPA GAVKLAKKKS 120
121 PEVKKEKEVS PKPKQAATSV SA
|
| Detection Method: |  |
| Confidence: | 14.0 |
| Match: | 1hstA_ |
| Description: | Histone H5, globular domain |
Matching Structure (courtesy of the PDB): |
|
| Term | Confidence | Notes |
| binding | 0.835523092977445 | bayes_pls_golite062009 |
| transcription regulator activity | 0.4843036104266 | bayes_pls_golite062009 |
| nucleic acid binding | 0.37117756729668 | bayes_pls_golite062009 |
| DNA binding | 0.3118855114645 | bayes_pls_golite062009 |
|
Region A: Residues: [143-258] |
1 11 21 31 41 51
| | | | | |
1 TASKAKAAST KLAPKKVVKK KSPTVTAKKA SSPSSLTYKE MILKSMPQLN DGKGSSRIVL 60
61 KKYVKDTFSS KLKTSSNFDY LFNSAIKKCV ENGELVQPKG PSGIIKLNKK KVKLST
|
| Detection Method: | |
Shown below are all of our structure predictions for this domain.
Click here to view only most confident match.
| MCM Score |
GO Score |
GO Term |
SCOP Match |
SCOP Description | ||
| View | Download | 0.564 | 0.482 | nuclear nucleosome | a.1.1 | Globin-like |
| View | Download | 0.661 | 0.080 | nuclear nucleosome | a.4.6 | C-terminal effector domain of the bipartite response regulators |
| View | Download | 0.552 | 0.020 | nuclear nucleosome | a.4.3 | ARID-like |
| View | Download | 0.486 | N/A | N/A | a.22.1 | Histone-fold |
| View | Download | 0.452 | N/A | N/A | a.4.6 | C-terminal effector domain of the bipartite response regulators |
| View | Download | 0.429 | N/A | N/A | a.4.6 | C-terminal effector domain of the bipartite response regulators |
| View | Download | 0.404 | N/A | N/A | a.4.5 | "Winged helix" DNA-binding domain |
| View | Download | 0.386 | N/A | N/A | a.4.1 | Homeodomain-like |
| View | Download | 0.385 | N/A | N/A | a.4.5 | "Winged helix" DNA-binding domain |
| View | Download | 0.370 | N/A | N/A | a.4.5 | "Winged helix" DNA-binding domain |
| View | Download | 0.345 | N/A | N/A | a.4.6 | C-terminal effector domain of the bipartite response regulators |
| View | Download | 0.340 | N/A | N/A | a.4.5 | "Winged helix" DNA-binding domain |
| View | Download | 0.333 | N/A | N/A | a.4.3 | ARID-like |
| View | Download | 0.332 | N/A | N/A | a.4.5 | "Winged helix" DNA-binding domain |
| View | Download | 0.316 | N/A | N/A | a.4.5 | "Winged helix" DNA-binding domain |
| View | Download | 0.307 | N/A | N/A | a.1.1 | Globin-like |
| View | Download | 0.300 | N/A | N/A | a.4.5 | "Winged helix" DNA-binding domain |
| View | Download | 0.290 | N/A | N/A | a.4.5 | "Winged helix" DNA-binding domain |
| View | Download | 0.281 | N/A | N/A | a.60.9 | lambda integrase-like, N-terminal domain |
| View | Download | 0.277 | N/A | N/A | a.1.1 | Globin-like |
| View | Download | 0.267 | N/A | N/A | a.3.1 | Cytochrome c |
| View | Download | 0.264 | N/A | N/A | a.1.1 | Globin-like |
| View | Download | 0.261 | N/A | N/A | a.118.8 | TPR-like |
| View | Download | 0.253 | N/A | N/A | a.4.5 | "Winged helix" DNA-binding domain |
| View | Download | 0.253 | N/A | N/A | d.110.4 | SNARE-like |
| View | Download | 0.251 | N/A | N/A | a.80.1 | DNA polymerase III clamp loader subunits, C-terminal domain |
| View | Download | 0.250 | N/A | N/A | a.27.1 | Anticodon-binding domain of a subclass of class I aminoacyl-tRNA synthetases |
| View | Download | 0.246 | N/A | N/A | a.181.1 | Antibiotic binding domain of TipA-like multidrug resistance regulators |
| View | Download | 0.244 | N/A | N/A | a.1.1 | Globin-like |
| View | Download | 0.243 | N/A | N/A | a.74.1 | Cyclin-like |
| View | Download | 0.234 | N/A | N/A | a.4.1 | Homeodomain-like |
| View | Download | 0.225 | N/A | N/A | a.1.1 | Globin-like |
| View | Download | 0.216 | N/A | N/A | a.61.1 | Retroviral matrix proteins |
| View | Download | 0.213 | N/A | N/A | a.1.1 | Globin-like |
| View | Download | 0.212 | N/A | N/A | a.39.1 | EF-hand |
| View | Download | 0.210 | N/A | N/A | a.46.1 | Methionine synthase domain |
| View | Download | 0.205 | N/A | N/A | a.4.12 | TrpR-like |
| View | Download | 0.203 | N/A | N/A | a.24.16 | Nucleotidyltransferase substrate binding subunit/domain |
| Term | Confidence | Notes |
| binding | 0.835523092977445 | bayes_pls_golite062009 |
| transcription regulator activity | 0.4843036104266 | bayes_pls_golite062009 |
| nucleic acid binding | 0.37117756729668 | bayes_pls_golite062009 |
| DNA binding | 0.3118855114645 | bayes_pls_golite062009 |
