Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for YOR338W.
| Description | E-value | Query Range |
Subject Range |
|
|
0.0 | [1..363] | [1..363] |
|
|
1.0E-84 | [4..322] | [50..422] |
|
|
6.0E-61 | [103..351] | [310..555] |
|
|
1.0E-59 | [71..363] | [134..402] |
|
|
1.0E-52 | [104..354] | [232..511] |
|
|
4.0E-52 | [100..352] | [280..522] |
|
|
8.0E-52 | [88..354] | [275..535] |
|
Region A: Residues: [1-96] |
1 11 21 31 41 51
| | | | | |
1 MLDNMQFHSP APEHPQLNGG INKIPASHKI GYKLNQQVQR LAVVRNNIEE RLNSMESSHG 60
61 QISDSSVVRA IDASIDDFLI PSPPLSPKLR QCPIIS
|
| Detection Method: |  |
Shown below are all of our structure predictions for this domain.
Click here to view only most confident match.
| MCM Score |
GO Score |
GO Term |
SCOP Match |
SCOP Description | ||
| View | Download | 0.640 | N/A | N/A | a.39.1 | EF-hand |
| View | Download | 0.640 | N/A | N/A | a.39.1 | EF-hand |
| View | Download | 0.622 | N/A | N/A | a.59.1 | PAH2 domain |
| View | Download | 0.622 | N/A | N/A | a.59.1 | PAH2 domain |
| View | Download | 0.560 | N/A | N/A | a.13.1 | alpha-2-Macroglobulin receptor associated protein (RAP) domain 1 |
| View | Download | 0.560 | N/A | N/A | a.13.1 | alpha-2-Macroglobulin receptor associated protein (RAP) domain 1 |
| View | Download | 0.494 | N/A | N/A | a.24.7 | FKBP12-rapamycin-binding domain of FKBP-rapamycin-associated protein (FRAP) |
| View | Download | 0.494 | N/A | N/A | a.24.7 | FKBP12-rapamycin-binding domain of FKBP-rapamycin-associated protein (FRAP) |
| View | Download | 0.486 | N/A | N/A | a.7.2 | Enzyme IIa from lactose specific PTS, IIa-lac |
| View | Download | 0.486 | N/A | N/A | a.7.2 | Enzyme IIa from lactose specific PTS, IIa-lac |
| View | Download | 0.452 | N/A | N/A | a.5.6 | Hypothetical protein MTH1615 |
| View | Download | 0.420 | N/A | N/A | d.58.49 | YajQ-like |
| View | Download | 0.392 | N/A | N/A | a.2.11 | Fe,Mn superoxide dismutase (SOD), N-terminal domain |
| View | Download | 0.375 | N/A | N/A | a.23.1 | HSC20 (HSCB), C-terminal oligomerisation domain |
| View | Download | 0.374 | N/A | N/A | a.29.2 | Bromodomain |
| View | Download | 0.343 | N/A | N/A | f.17.1 | F1F0 ATP synthase subunit C |
| View | Download | 0.342 | N/A | N/A | a.47.2 | t-snare proteins |
| View | Download | 0.324 | N/A | N/A | d.58.4 | Dimeric alpha+beta barrel |
| View | Download | 0.311 | N/A | N/A | f.36.1 | Neurotransmitter-gated ion-channel pransmembrane pore |
| View | Download | 0.310 | N/A | N/A | d.55.1 | Ribosomal protein L22 |
| View | Download | 0.301 | N/A | N/A | a.25.1 | Ferritin-like |
| View | Download | 0.300 | N/A | N/A | d.150.1 | 4'-phosphopantetheinyl transferase |
| View | Download | 0.289 | N/A | N/A | d.58.20 | NAD-binding domain of HMG-CoA reductase |
| View | Download | 0.288 | N/A | N/A | f.34.1 | Mechanosensitive channel protein MscS (YggB), transmembrane region |
| View | Download | 0.283 | N/A | N/A | a.4.6 | C-terminal effector domain of the bipartite response regulators |
| View | Download | 0.282 | N/A | N/A | a.60.5 | Barrier-to-autointegration factor, BAF |
| View | Download | 0.279 | N/A | N/A | a.44.1 | Disulphide-bond formation facilitator (DSBA), insertion domain |
| View | Download | 0.274 | N/A | N/A | a.47.2 | t-snare proteins |
| View | Download | 0.258 | N/A | N/A | a.2.7 | tRNA-binding arm |
| View | Download | 0.254 | N/A | N/A | a.24.4 | Hemerythrin |
| View | Download | 0.251 | N/A | N/A | a.24.17 | Group V grass pollen allergen |
| View | Download | 0.248 | N/A | N/A | d.58.44 | Multidrug efflux transporter AcrB pore domain; PN1, PN2, PC1 and PC2 subdomains |
| View | Download | 0.241 | N/A | N/A | a.24.3 | Cytochromes |
| View | Download | 0.237 | N/A | N/A | d.43.1 | Elongation factor Ts (EF-Ts), dimerisation domain |
| View | Download | 0.237 | N/A | N/A | a.7.1 | Spectrin repeat |
| View | Download | 0.235 | N/A | N/A | a.7.6 | Ribosomal protein S20 |
| View | Download | 0.232 | N/A | N/A | a.8.1 | Bacterial immunoglobulin/albumin-binding domains |
| View | Download | 0.228 | N/A | N/A | a.22.1 | Histone-fold |
| View | Download | 0.228 | N/A | N/A | a.74.1 | Cyclin-like |
| View | Download | 0.225 | N/A | N/A | d.50.3 | PI-Pfui intein middle domain |
| View | Download | 0.221 | N/A | N/A | a.7.5 | Tubulin chaperone cofactor A |
| View | Download | 0.215 | N/A | N/A | a.121.1 | Tetracyclin repressor-like, C-terminal domain |
| View | Download | 0.213 | N/A | N/A | c.47.1 | Thioredoxin-like |
| View | Download | 0.212 | N/A | N/A | a.24.13 | Domain of the SRP/SRP receptor G-proteins |
| View | Download | 0.210 | N/A | N/A | a.130.1 | Chorismate mutase II |
| View | Download | 0.208 | N/A | N/A | a.47.2 | t-snare proteins |
| View | Download | 0.205 | N/A | N/A | d.67.3 | Ribosome recycling factor, RRF |
|
Region A: Residues: [97-363] |
1 11 21 31 41 51
| | | | | |
1 QPQLVNVESD HRELIMLTPV WEAGLNSQKY NHNTRNFLSQ YSFFRDMKTT KRIPNKENRK 60
61 LKVVKSVVNS EALPKRRRYD RKIKRRSREL YEDDGNRSEN YDEESAQEVP VRSVTPIRQV 120
121 KRSLHTISSP LASQGVVNNV PKYIPSMSWE KLPDYSPPLH TLPNSNNKVL KVEWKGSPMD 180
181 LNHDPLKQRL HPAELVLAQI LRLPCDLYLD SKRRFFLEKV HRFKKGLPFR RTDAQKACRI 240
241 DVNKASRLFA AFEKVGWLQD KHFEKYL
|
| Detection Method: | |
Shown below are all of our structure predictions for this domain.
Click here to view only most confident match.
Found no structure predictions for this domain.
|
Region A: Residues: [250-363] |
1 11 21 31 41 51
| | | | | |
1 DYSPPLHTLP NSNNKVLKVE WKGSPMDLNH DPLKQRLHPA ELVLAQILRL PCDLYLDSKR 60
61 RFFLEKVHRF KKGLPFRRTD AQKACRIDVN KASRLFAAFE KVGWLQDKHF EKYL
|
| Detection Method: | |
| Confidence: | 27.0 |
| Match: | 2cujA |
| Description: | Solution structure of SWIRM domain of mouse transcriptional adaptor 2-like |
Matching Structure (courtesy of the PDB): |
|
| Term | Confidence | Notes |
| transcription regulator activity | 3.61657063316558 | bayes_pls_golite062009 |
| DNA binding | 3.20600447901865 | bayes_pls_golite062009 |
| nucleic acid binding | 3.13775670276163 | bayes_pls_golite062009 |
| transcription factor activity | 2.61318050866004 | bayes_pls_golite062009 |
| sequence-specific DNA binding | 2.14408928200987 | bayes_pls_golite062009 |
| binding | 2.12643314274039 | bayes_pls_golite062009 |
| RNA polymerase II transcription factor activity | 1.77209608685482 | bayes_pls_golite062009 |
| transcription activator activity | 1.75864690109096 | bayes_pls_golite062009 |
| protein binding | 1.62529996900514 | bayes_pls_golite062009 |
| transcription repressor activity | 0.605733396003465 | bayes_pls_golite062009 |
| specific RNA polymerase II transcription factor activity | 0.380372494934551 | bayes_pls_golite062009 |
| chromatin binding | 0.346262410069781 | bayes_pls_golite062009 |
| transcription factor binding | 0.109547968922689 | bayes_pls_golite062009 |
