YRC Public Data Repository - Protein Structure Prediction

Protein:	DGK1
Organism:	Saccharomyces cerevisiae
Length:	290 amino acids
Reference:	Malmström L, et al. (2007) Superfamily assignments for the yeast proteome through integration of structure prediction with the gene ontology. PLoS Biol 5(4): e76. doi:10.1371/journal.pbio.0050076

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for DGK1.

Description	E-value	Query Range	Subject Range
gi\|207340900 - gi\|207340900\|gb\|EDZ69108.1\| YOR311Cp-like protein [Saccharomyces cerevisiae AWRI1631] DGK1 - Diacylglycerol kinase, localized to the endoplasmic reticulum (ER); overproduction induces enlargeme... DGK1_YEAST - CTP-dependent diacylglycerol kinase 1 OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=DG... gi\|190407611 - gi\|190407611\|gb\|EDV10878.1\| ER membrane protein [Saccharomyces cerevisiae RM11-1a]	2.0E-69	[1..290]	[1..290]
gi\|8843778 - gi\|8843778\|dbj\|BAA97326.1\| unnamed protein product [Arabidopsis thaliana]	9.0E-48	[20..236]	[49..268]
gi\|85082020 - gi\|85082020\|ref\|XP_956828.1\| hypothetical protein [Neurospora crassa OR74A] gi\|28917907, gi\|... - gi\|32404052\|ref\|XP_322639.1\| hypothetical protein [Neurospora crassa], gi\|28917907\|gb\|EAA27592.1\| hy...	8.0E-43	[62..288]	[350..596]
DGK1_SCHPO - CTP-dependent diacylglycerol kinase 1 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=ptp4... ptp4 - phosphatidate cytidylyltransferase Ptp4	1.0E-42	[62..285]	[4..218]

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Predicted Domain #1

Region A:
Residues: [1-75]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MGTEDAIALP NSTLEPRTEA KQRLSSKSHQ VSAKVTIPAK EEISSSDDDA HVPVTEIHLK  60
   61 SHEWFGDFIT KHEIP

[Run NCBI BLAST on this sequence.]

Detection Method:

deduced

Shown below is our most confident de novo (Rosetta) prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

Predicted Domain #2

Region A:
Residues: [76-290]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 RKVFHSSIGF ITLYLYTQGI NYKNVLWPLI YAFIILFILD LIRLNWPFFN MLYCRTVGAL  60
   61 MRKKEIHTYN GVLWYILGLI FSFNFFSKDV TLISLFLLSW SDTAAATIGR KYGHLTPKVA 120
  121 RNKSLAGSIA AFTVGVITCW VFYGYFVPAY SYVNKPGEIQ WSPETSRLSL NMLSLLGGVV 180
  181 AALSEGIDLF NWDDNFTIPV LSSLFMNAVI KTFKK

[Run NCBI BLAST on this sequence.]

Detection Method:	Pfam
Confidence:	84.568636
Match:	PF01879
Description:	No description for PF01879 was found.

Shown below is our most confident prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits